Search Results for author: Elliot K. Fishman

Found 21 papers, 4 papers with code

Label-Assemble: Leveraging Multiple Datasets with Partial Labels

2 code implementations25 Sep 2021 Mintong Kang, Bowen Li, Zengle Zhu, Yongyi Lu, Elliot K. Fishman, Alan L. Yuille, Zongwei Zhou

We discovered that learning from negative examples facilitates both computer-aided disease diagnosis and detection.

COVID-19 Diagnosis Specificity

Learning Inductive Attention Guidance for Partially Supervised Pancreatic Ductal Adenocarcinoma Prediction

no code implementations31 May 2021 Yan Wang, Peng Tang, Yuyin Zhou, Wei Shen, Elliot K. Fishman, Alan L. Yuille

We instantiate both the global and the local classifiers by multiple instance learning (MIL), where the attention guidance, indicating roughly where the PDAC regions are, is the key to bridging them: For global MIL based normal/PDAC classification, attention serves as a weight for each instance (voxel) during MIL pooling, which eliminates the distraction from the background; For local MIL based semi-supervised PDAC segmentation, the attention guidance is inductive, which not only provides bag-level pseudo-labels to training data without per-voxel annotations for MIL training, but also acts as a proxy of an instance-level classifier.

Multiple Instance Learning Segmentation

Volumetric Medical Image Segmentation: A 3D Deep Coarse-to-fine Framework and Its Adversarial Examples

no code implementations29 Oct 2020 Yingwei Li, Zhuotun Zhu, Yuyin Zhou, Yingda Xia, Wei Shen, Elliot K. Fishman, Alan L. Yuille

Although deep neural networks have been a dominant method for many 2D vision tasks, it is still challenging to apply them to 3D tasks, such as medical image segmentation, due to the limited amount of annotated 3D data and limited computational resources.

Image Segmentation Pancreas Segmentation +2

Segmentation for Classification of Screening Pancreatic Neuroendocrine Tumors

no code implementations4 Apr 2020 Zhuotun Zhu, Yongyi Lu, Wei Shen, Elliot K. Fishman, Alan L. Yuille

This work presents comprehensive results to detect in the early stage the pancreatic neuroendocrine tumors (PNETs), a group of endocrine tumors arising in the pancreas, which are the second common type of pancreatic cancer, by checking the abdominal CT scans.

Classification General Classification +1

Deep Distance Transform for Tubular Structure Segmentation in CT Scans

no code implementations CVPR 2020 Yan Wang, Xu Wei, Fengze Liu, Jieneng Chen, Yuyin Zhou, Wei Shen, Elliot K. Fishman, Alan L. Yuille

Tubular structure segmentation in medical images, e. g., segmenting vessels in CT scans, serves as a vital step in the use of computers to aid in screening early stages of related diseases.

Segmentation

Thickened 2D Networks for Efficient 3D Medical Image Segmentation

no code implementations2 Apr 2019 Qihang Yu, Yingda Xia, Lingxi Xie, Elliot K. Fishman, Alan L. Yuille

With this design, we achieve a higher performance while maintaining a lower inference latency on a few abdominal organs from CT scans, in particular when the organ has a peculiar 3D shape and thus strongly requires contextual information, demonstrating our method's effectiveness and ability in capturing 3D information.

Image Segmentation Medical Image Segmentation +2

Elastic Boundary Projection for 3D Medical Image Segmentation

2 code implementations CVPR 2019 Tianwei Ni, Lingxi Xie, Huangjie Zheng, Elliot K. Fishman, Alan L. Yuille

The key observation is that, although the object is a 3D volume, what we really need in segmentation is to find its boundary which is a 2D surface.

3D Medical Imaging Segmentation Image Segmentation +4

Generalized Coarse-to-Fine Visual Recognition with Progressive Training

no code implementations29 Nov 2018 Xutong Ren, Lingxi Xie, Chen Wei, Siyuan Qiao, Chi Su, Jiaying Liu, Qi Tian, Elliot K. Fishman, Alan L. Yuille

Computer vision is difficult, partly because the desired mathematical function connecting input and output data is often complex, fuzzy and thus hard to learn.

Image Classification Object Localization +1

Phase Collaborative Network for Two-Phase Medical Image Segmentation

no code implementations28 Nov 2018 Huangjie Zheng, Lingxi Xie, Tianwei Ni, Ya zhang, Yan-Feng Wang, Qi Tian, Elliot K. Fishman, Alan L. Yuille

However, in medical image analysis, fusing prediction from two phases is often difficult, because (i) there is a domain gap between two phases, and (ii) the semantic labels are not pixel-wise corresponded even for images scanned from the same patient.

Image Segmentation Medical Image Analysis +4

Multi-Scale Coarse-to-Fine Segmentation for Screening Pancreatic Ductal Adenocarcinoma

no code implementations9 Jul 2018 Zhuotun Zhu, Yingda Xia, Lingxi Xie, Elliot K. Fishman, Alan L. Yuille

We propose an intuitive approach of detecting pancreatic ductal adenocarcinoma (PDAC), the most common type of pancreatic cancer, by checking abdominal CT scans.

General Classification Segmentation +1

Joint Shape Representation and Classification for Detecting PDAC

no code implementations27 Apr 2018 Fengze Liu, Lingxi Xie, Yingda Xia, Elliot K. Fishman, Alan L. Yuille

Shape representation and classification are performed in a joint manner, both to exploit the knowledge that PDAC often changes the shape of the pancreas and to prevent over-fitting.

Classification General Classification +1

Abdominal multi-organ segmentation with organ-attention networks and statistical fusion

no code implementations23 Apr 2018 Yan Wang, Yuyin Zhou, Wei Shen, Seyoun Park, Elliot K. Fishman, Alan L. Yuille

To address these challenges, we introduce a novel framework for multi-organ segmentation by using organ-attention networks with reverse connections (OAN-RCs) which are applied to 2D views, of the 3D CT volume, and output estimates which are combined by statistical fusion exploiting structural similarity.

Organ Segmentation

Training Multi-organ Segmentation Networks with Sample Selection by Relaxed Upper Confident Bound

no code implementations7 Apr 2018 Yan Wang, Yuyin Zhou, Peng Tang, Wei Shen, Elliot K. Fishman, Alan L. Yuille

Based on the fact that very hard samples might have annotation errors, we propose a new sample selection policy, named Relaxed Upper Confident Bound (RUCB).

Image Segmentation Medical Image Segmentation +3

Semi-Supervised Multi-Organ Segmentation via Deep Multi-Planar Co-Training

no code implementations7 Apr 2018 Yuyin Zhou, Yan Wang, Peng Tang, Song Bai, Wei Shen, Elliot K. Fishman, Alan L. Yuille

In multi-organ segmentation of abdominal CT scans, most existing fully supervised deep learning algorithms require lots of voxel-wise annotations, which are usually difficult, expensive, and slow to obtain.

Image Segmentation Organ Segmentation +2

Recurrent Saliency Transformation Network: Incorporating Multi-Stage Visual Cues for Small Organ Segmentation

2 code implementations CVPR 2018 Qihang Yu, Lingxi Xie, Yan Wang, Yuyin Zhou, Elliot K. Fishman, Alan L. Yuille

The key innovation is a saliency transformation module, which repeatedly converts the segmentation probability map from the previous iteration as spatial weights and applies these weights to the current iteration.

Organ Segmentation Pancreas Segmentation +1

Deep Supervision for Pancreatic Cyst Segmentation in Abdominal CT Scans

no code implementations22 Jun 2017 Yuyin Zhou, Lingxi Xie, Elliot K. Fishman, Alan L. Yuille

Inspired by the high relevance between the location of a pancreas and its cystic region, we introduce extra deep supervision into the segmentation network, so that cyst segmentation can be improved with the help of relatively easier pancreas segmentation.

Pancreas Segmentation Segmentation

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