Search Results for author: Errol Colak

Found 13 papers, 3 papers with code

The Brain Tumor Segmentation (BraTS) Challenge: Local Synthesis of Healthy Brain Tissue via Inpainting

1 code implementation15 May 2023 Florian Kofler, Felix Meissen, Felix Steinbauer, Robert Graf, Stefan K Ehrlich, Annika Reinke, Eva Oswald, Diana Waldmannstetter, Florian Hoelzl, Izabela Horvath, Oezguen Turgut, Suprosanna Shit, Christina Bukas, Kaiyuan Yang, Johannes C. Paetzold, Ezequiel de da Rosa, Isra Mekki, Shankeeth Vinayahalingam, Hasan Kassem, Juexin Zhang, Ke Chen, Ying Weng, Alicia Durrer, Philippe C. Cattin, Julia Wolleb, M. S. Sadique, M. M. Rahman, W. Farzana, A. Temtam, K. M. Iftekharuddin, Maruf Adewole, Syed Muhammad Anwar, Ujjwal Baid, Anastasia Janas, Anahita Fathi Kazerooni, Dominic LaBella, Hongwei Bran Li, Ahmed W Moawad, Gian-Marco Conte, Keyvan Farahani, James Eddy, Micah Sheller, Sarthak Pati, Alexandros Karagyris, Alejandro Aristizabal, Timothy Bergquist, Verena Chung, Russell Takeshi Shinohara, Farouk Dako, Walter Wiggins, Zachary Reitman, Chunhao Wang, Xinyang Liu, Zhifan Jiang, Elaine Johanson, Zeke Meier, Ariana Familiar, Christos Davatzikos, John Freymann, Justin Kirby, Michel Bilello, Hassan M Fathallah-Shaykh, Roland Wiest, Jan Kirschke, Rivka R Colen, Aikaterini Kotrotsou, Pamela Lamontagne, Daniel Marcus, Mikhail Milchenko, Arash Nazeri, Marc-André Weber, Abhishek Mahajan, Suyash Mohan, John Mongan, Christopher Hess, Soonmee Cha, Javier Villanueva-Meyer, Errol Colak, Priscila Crivellaro, Andras Jakab, Abiodun Fatade, Olubukola Omidiji, Rachel Akinola Lagos, O O Olatunji, Goldey Khanna, John Kirkpatrick, Michelle Alonso-Basanta, Arif Rashid, Miriam Bornhorst, Ali Nabavizadeh, Natasha Lepore, Joshua Palmer, Antonio Porras, Jake Albrecht, Udunna Anazodo, Mariam Aboian, Evan Calabrese, Jeffrey David Rudie, Marius George Linguraru, Juan Eugenio Iglesias, Koen van Leemput, Spyridon Bakas, Benedikt Wiestler, Ivan Ezhov, Marie Piraud, Bjoern H Menze

The challenge is organized as part of the ASNR-BraTS MICCAI challenge.

Anatomy Brain Tumor Segmentation +3

BenchMD: A Benchmark for Unified Learning on Medical Images and Sensors

1 code implementation17 Apr 2023 Kathryn Wantlin, Chenwei Wu, Shih-Cheng Huang, Oishi Banerjee, Farah Dadabhoy, Veeral Vipin Mehta, Ryan Wonhee Han, Fang Cao, Raja R. Narayan, Errol Colak, Adewole Adamson, Laura Heacock, Geoffrey H. Tison, Alex Tamkin, Pranav Rajpurkar

Finally, we evaluate performance on out-of-distribution data collected at different hospitals than the training data, representing naturally-occurring distribution shifts that frequently degrade the performance of medical AI models.

Self-Supervised Learning

NanoBatch Privacy: Enabling fast Differentially Private learning on the IPU

no code implementations24 Sep 2021 Edward H. Lee, Mario Michael Krell, Alexander Tsyplikhin, Victoria Rege, Errol Colak, Kristen W. Yeom

We also provide two extensions: 1) DPSGD for pipelined models and 2) per-layer clipping that is 15x faster than the Opacus implementation on 8x A100s.

The RSNA-ASNR-MICCAI BraTS 2021 Benchmark on Brain Tumor Segmentation and Radiogenomic Classification

1 code implementation5 Jul 2021 Ujjwal Baid, Satyam Ghodasara, Suyash Mohan, Michel Bilello, Evan Calabrese, Errol Colak, Keyvan Farahani, Jayashree Kalpathy-Cramer, Felipe C. Kitamura, Sarthak Pati, Luciano M. Prevedello, Jeffrey D. Rudie, Chiharu Sako, Russell T. Shinohara, Timothy Bergquist, Rong Chai, James Eddy, Julia Elliott, Walter Reade, Thomas Schaffter, Thomas Yu, Jiaxin Zheng, Ahmed W. Moawad, Luiz Otavio Coelho, Olivia McDonnell, Elka Miller, Fanny E. Moron, Mark C. Oswood, Robert Y. Shih, Loizos Siakallis, Yulia Bronstein, James R. Mason, Anthony F. Miller, Gagandeep Choudhary, Aanchal Agarwal, Cristina H. Besada, Jamal J. Derakhshan, Mariana C. Diogo, Daniel D. Do-Dai, Luciano Farage, John L. Go, Mohiuddin Hadi, Virginia B. Hill, Michael Iv, David Joyner, Christie Lincoln, Eyal Lotan, Asako Miyakoshi, Mariana Sanchez-Montano, Jaya Nath, Xuan V. Nguyen, Manal Nicolas-Jilwan, Johanna Ortiz Jimenez, Kerem Ozturk, Bojan D. Petrovic, Chintan Shah, Lubdha M. Shah, Manas Sharma, Onur Simsek, Achint K. Singh, Salil Soman, Volodymyr Statsevych, Brent D. Weinberg, Robert J. Young, Ichiro Ikuta, Amit K. Agarwal, Sword C. Cambron, Richard Silbergleit, Alexandru Dusoi, Alida A. Postma, Laurent Letourneau-Guillon, Gloria J. Guzman Perez-Carrillo, Atin Saha, Neetu Soni, Greg Zaharchuk, Vahe M. Zohrabian, Yingming Chen, Milos M. Cekic, Akm Rahman, Juan E. Small, Varun Sethi, Christos Davatzikos, John Mongan, Christopher Hess, Soonmee Cha, Javier Villanueva-Meyer, John B. Freymann, Justin S. Kirby, Benedikt Wiestler, Priscila Crivellaro, Rivka R. Colen, Aikaterini Kotrotsou, Daniel Marcus, Mikhail Milchenko, Arash Nazeri, Hassan Fathallah-Shaykh, Roland Wiest, Andras Jakab, Marc-Andre Weber, Abhishek Mahajan, Bjoern Menze, Adam E. Flanders, Spyridon Bakas

The BraTS 2021 challenge celebrates its 10th anniversary and is jointly organized by the Radiological Society of North America (RSNA), the American Society of Neuroradiology (ASNR), and the Medical Image Computing and Computer Assisted Interventions (MICCAI) society.

Benchmarking Brain Tumor Segmentation +3

A Real-World Demonstration of Machine Learning Generalizability: Intracranial Hemorrhage Detection on Head CT

no code implementations9 Feb 2021 Hojjat Salehinejad, Jumpei Kitamura, Noah Ditkofsky, Amy Lin, Aditya Bharatha, Suradech Suthiphosuwan, Hui-Ming Lin, Jefferson R. Wilson, Muhammad Mamdani, Errol Colak

An ML model was trained using 21, 784 scans from the RSNA Intracranial Hemorrhage CT dataset while generalizability was evaluated using an external validation dataset obtained from our busy trauma and neurosurgical center.

BIG-bench Machine Learning Computed Tomography (CT) +1

Recent Advances in Recurrent Neural Networks

no code implementations29 Dec 2017 Hojjat Salehinejad, Sharan Sankar, Joseph Barfett, Errol Colak, Shahrokh Valaee

Recurrent neural networks (RNNs) are capable of learning features and long term dependencies from sequential and time-series data.

Time Series Time Series Analysis

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