A comparative study between vision transformers and CNNs in digital pathology

no code implementations • 1 Jun 2022 • Luca Deininger, Bernhard Stimpel, Anil Yuce, Samaneh Abbasi-Sureshjani, Simon Schönenberger, Paolo Ocampo, Konstanty Korski, Fabien Gaire

Due to the sparse availability of annotated whole slide images, we further compared both models pretrained on large amounts of unlabeled whole-slide images using state-of-the-art self-supervised approaches.

Inductive Bias whole slide images

Molecular Subtype Prediction for Breast Cancer Using H&E Specialized Backbone

no code implementations • MICCAI Workshop COMPAY 2021 • Samaneh Abbasi Sureshjani, Anil Yuce, Simon Till Schönenberger, Maris Skujevskis, Uwe Schalles, Fabien Gaire, Konstanty Korski

In this work, we investigated the predictiveness of morphological characteristics of Hematoxylin and Eosin (H&E) stained tissues for molecular subtype analysis, as an initial step for direct treatment response prediction based on H&E whole slide images (WSI).

Transfer Learning whole slide images