1 code implementation • 13 May 2025 • Nibir Chandra Mandal, Oishee Bintey Hoque, Abhijin Adiga, Samarth Swarup, Mandy Wilson, Lu Feng, Yangfeng Ji, Miaomiao Zhang, Geoffrey Fox, Madhav Marathe
We introduce IrrMap, the first large-scale dataset (1. 1 million patches) for irrigation method mapping across regions.
no code implementations • 1 May 2025 • Tien Comlekoglu, J. Quetzalcóatl Toledo-Marín, Tina Comlekoglu, Douglas W. DeSimone, Shayn M. Peirce, Geoffrey Fox, James A. Glazier
The Cellular-Potts model is a powerful and ubiquitous framework for developing computational models for simulating complex multicellular biological systems.
no code implementations • 3 Mar 2025 • Elizabeth G. Campolongo, Yuan-Tang Chou, Ekaterina Govorkova, Wahid Bhimji, Wei-Lun Chao, Chris Harris, Shih-Chieh Hsu, Hilmar Lapp, Mark S. Neubauer, Josephine Namayanja, Aneesh Subramanian, Philip Harris, Advaith Anand, David E. Carlyn, Subhankar Ghosh, Christopher Lawrence, Eric Moreno, Ryan Raikman, Jiaman Wu, Ziheng Zhang, Bayu Adhi, Mohammad Ahmadi Gharehtoragh, Saúl Alonso Monsalve, Marta Babicz, Furqan Baig, Namrata Banerji, William Bardon, Tyler Barna, Tanya Berger-Wolf, Adji Bousso Dieng, Micah Brachman, Quentin Buat, David C. Y. Hui, Phuong Cao, Franco Cerino, Yi-Chun Chang, Shivaji Chaulagain, An-Kai Chen, Deming Chen, Eric Chen, Chia-Jui Chou, Zih-Chen Ciou, Miles Cochran-Branson, Artur Cordeiro Oudot Choi, Michael Coughlin, Matteo Cremonesi, Maria Dadarlat, Peter Darch, Malina Desai, Daniel Diaz, Steven Dillmann, Javier Duarte, Isla Duporge, Urbas Ekka, Saba Entezari Heravi, Hao Fang, Rian Flynn, Geoffrey Fox, Emily Freed, Hang Gao, Jing Gao, Julia Gonski, Matthew Graham, Abolfazl Hashemi, Scott Hauck, James Hazelden, Joshua Henry Peterson, Duc Hoang, Wei Hu, Mirco Huennefeld, David Hyde, Vandana Janeja, Nattapon Jaroenchai, Haoyi Jia, Yunfan Kang, Maksim Kholiavchenko, Elham E. Khoda, Sangin Kim, Aditya Kumar, Bo-Cheng Lai, Trung Le, Chi-Wei Lee, Janghyeon Lee, Shaocheng Lee, Suzan van der Lee, Charles Lewis, Haitong Li, Haoyang Li, Henry Liao, Mia Liu, Xiaolin Liu, Xiulong Liu, Vladimir Loncar, Fangzheng Lyu, Ilya Makarov, Abhishikth Mallampalli Chen-Yu Mao, Alexander Michels, Alexander Migala, Farouk Mokhtar, Mathieu Morlighem, Min Namgung, Andrzej Novak, Andrew Novick, Amy Orsborn, Anand Padmanabhan, Jia-Cheng Pan, Sneh Pandya, Zhiyuan Pei, Ana Peixoto, George Percivall, Alex Po Leung, Sanjay Purushotham, Zhiqiang Que, Melissa Quinnan, Arghya Ranjan, Dylan Rankin, Christina Reissel, Benedikt Riedel, Dan Rubenstein, Argyro Sasli, Eli Shlizerman, Arushi Singh, Kim Singh, Eric R. Sokol, Arturo Sorensen, Yu Su, Mitra Taheri, Vaibhav Thakkar, Ann Mariam Thomas, Eric Toberer, Chenghan Tsai, Rebecca Vandewalle, Arjun Verma, Ricco C. Venterea, He Wang, Jianwu Wang, Sam Wang, Shaowen Wang, Gordon Watts, Jason Weitz, Andrew Wildridge, Rebecca Williams, Scott Wolf, Yue Xu, Jianqi Yan, Jai Yu, Yulei Zhang, Haoran Zhao, Ying Zhao, Yibo Zhong
We present the different datasets along with a scheme to make machine learning challenges around the three datasets findable, accessible, interoperable, and reusable (FAIR).
1 code implementation • 8 Jan 2025 • Mills Staylor, Amirreza Dolatpour Fathkouhi, Md Khairul Islam, Kaleigh O'Hara, Ryan Ghiles Goudjil, Geoffrey Fox, Judy Fox
Large-scale astronomical image data processing and prediction is essential for astronomers, providing crucial insights into celestial objects, the universe's history, and its evolution.
no code implementations • 6 Dec 2024 • Ian Lu, Hao Jia, Sebastian Gonzalez, Deniz Sogutlu, J. Quetzalcoatl Toledo-Marin, Sehmimul Hoque, Abhishek Abhishek, Colin Gay, Roger Melko, Eric Paquet, Geoffrey Fox, Maximilian Swiatlowski, Wojciech Fedorko
Through the integration of classical computation and quantum simulation, this hybrid framework paves way for utilizing large-scale quantum simulations as priors in deep generative models.
no code implementations • 19 Oct 2024 • Junyang He, Ying-Jung Chen, Anushka Idamekorala, Geoffrey Fox
This analysis is fully open source with a Jupyter Notebook running on Google Colab for both an LSTM-based analysis and the data engineering preprocessing.
no code implementations • 1 Sep 2024 • Xiaoxiang Sun, Geoffrey Fox
3D object detection is critical for autonomous driving, leveraging deep learning techniques to interpret LiDAR data.
no code implementations • 21 Aug 2024 • Alireza Jafari, Geoffrey Fox, John B. Rundle, Andrea Donnellan, Lisa Grant Ludwig
Despite significant advancements, existing literature on earthquake nowcasting lacks comprehensive evaluations of pre-trained foundation models and modern deep learning architectures.
no code implementations • 10 Jul 2024 • Pradeep Bajracharya, Javier Quetzalcóatl Toledo-Marín, Geoffrey Fox, Shantenu Jha, Linwei Wang
High-performance scientific simulations, important for comprehension of complex systems, encounter computational challenges especially when exploring extensive parameter spaces.
no code implementations • 8 Jun 2024 • Farzana Yasmin Ahmad, Vanamala Venkataswamy, Geoffrey Fox
Our evaluation revealed that the CaloDiffusion and CaloScore generative models demonstrate the most accurate simulation of particle showers, yet there remains substantial room for improvement.
no code implementations • 4 Dec 2023 • Tianle Zhong, Jiechen Zhao, Xindi Guo, Qiang Su, Geoffrey Fox
However, loading shuffled data for large datasets incurs significant overhead in the deep learning pipeline and severely impacts the end-to-end training throughput.
1 code implementation • 2 Nov 2023 • Cheng Luo, Tianle Zhong, Geoffrey Fox
In the evolving landscape of neural network models, one prominent challenge stand out: the significant memory overheads associated with training expansive models.
no code implementations • 3 Jul 2023 • Niranda Perera, Arup Kumar Sarker, Mills Staylor, Gregor von Laszewski, Kaiying Shan, Supun Kamburugamuve, Chathura Widanage, Vibhatha Abeykoon, Thejaka Amila Kanewela, Geoffrey Fox
In this paper, we are expanding on the initial concept by introducing a cost model for evaluating the said patterns.
no code implementations • 7 Feb 2023 • J. Quetzalcoatl Toledo-Marin, James A. Glazier, Geoffrey Fox
Our results indicate that increasing the size of the training set has a substantial effect on reducing performance fluctuations and overall error.
no code implementations • 30 Sep 2022 • E. A. Huerta, Ben Blaiszik, L. Catherine Brinson, Kristofer E. Bouchard, Daniel Diaz, Caterina Doglioni, Javier M. Duarte, Murali Emani, Ian Foster, Geoffrey Fox, Philip Harris, Lukas Heinrich, Shantenu Jha, Daniel S. Katz, Volodymyr Kindratenko, Christine R. Kirkpatrick, Kati Lassila-Perini, Ravi K. Madduri, Mark S. Neubauer, Fotis E. Psomopoulos, Avik Roy, Oliver Rübel, Zhizhen Zhao, Ruike Zhu
A foundational set of findable, accessible, interoperable, and reusable (FAIR) principles were proposed in 2016 as prerequisites for proper data management and stewardship, with the goal of enabling the reusability of scholarly data.
no code implementations • 18 Jan 2022 • Bo Feng, Geoffrey Fox
In contrast, applications in social networks, road traffic, physics, and chemical property prediction where data features can be organized with nodes and edges of graphs.
no code implementations • 18 Dec 2021 • Geoffrey Fox, John Rundle, Andrea Donnellan, Bo Feng
We review previous approaches to nowcasting earthquakes and introduce new approaches based on deep learning using three distinct models based on recurrent neural networks and transformers.
no code implementations • 25 Oct 2021 • Jeyan Thiyagalingam, Mallikarjun Shankar, Geoffrey Fox, Tony Hey
In this paper, we describe our approach to the development of scientific machine learning benchmarks and review other approaches to benchmarking scientific machine learning.
no code implementations • 21 Oct 2021 • Steven Farrell, Murali Emani, Jacob Balma, Lukas Drescher, Aleksandr Drozd, Andreas Fink, Geoffrey Fox, David Kanter, Thorsten Kurth, Peter Mattson, Dawei Mu, Amit Ruhela, Kento Sato, Koichi Shirahata, Tsuguchika Tabaru, Aristeidis Tsaris, Jan Balewski, Ben Cumming, Takumi Danjo, Jens Domke, Takaaki Fukai, Naoto Fukumoto, Tatsuya Fukushi, Balazs Gerofi, Takumi Honda, Toshiyuki Imamura, Akihiko Kasagi, Kentaro Kawakami, Shuhei Kudo, Akiyoshi Kuroda, Maxime Martinasso, Satoshi Matsuoka, Henrique Mendonça, Kazuki Minami, Prabhat Ram, Takashi Sawada, Mallikarjun Shankar, Tom St. John, Akihiro Tabuchi, Venkatram Vishwanath, Mohamed Wahib, Masafumi Yamazaki, Junqi Yin
Scientific communities are increasingly adopting machine learning and deep learning models in their applications to accelerate scientific insights.
no code implementations • 13 Aug 2021 • Vibhatha Abeykoon, Supun Kamburugamuve, Chathura Widanage, Niranda Perera, Ahmet Uyar, Thejaka Amila Kanewala, Gregor von Laszewski, Geoffrey Fox
They are comprised of a rich set of sub-domains such as data engineering, deep learning, and machine learning.
no code implementations • 27 Jul 2021 • Supun Kamburugamuve, Chathura Widanage, Niranda Perera, Vibhatha Abeykoon, Ahmet Uyar, Thejaka Amila Kanewala, Gregor von Laszewski, Geoffrey Fox
They employ a set of operators on specific data abstractions that include vectors, matrices, tensors, graphs, and tables.
no code implementations • 19 Apr 2021 • Pulasthi Wickramasinghe, Geoffrey Fox
Multidimensional scaling of gene sequence data has long played a vital role in analysing gene sequence data to identify clusters and patterns.
1 code implementation • 10 Feb 2021 • J. Quetzalcóatl Toledo-Marín, Geoffrey Fox, James P. Sluka, James A. Glazier
To improve convergence during training, we apply a training approach that uses roll-back to reject stochastic changes to the network that increase the loss function.
no code implementations • 27 Oct 2020 • Niranda Perera, Vibhatha Abeykoon, Chathura Widanage, Supun Kamburugamuve, Thejaka Amila Kanewala, Pulasthi Wickramasinghe, Ahmet Uyar, Hasara Maithree, Damitha Lenadora, Geoffrey Fox
But, we believe that there is an essential requirement for a data analytics tool that can universally integrate with existing frameworks, and thereby increase the productivity and efficiency of the entire data analytics pipeline.
no code implementations • 8 Oct 2020 • Yuchen Wang, Mingze Xu, John Paden, Lora Koenig, Geoffrey Fox, David Crandall
Understanding the structure of Earth's polar ice sheets is important for modeling how global warming will impact polar ice and, in turn, the Earth's climate.
no code implementations • 19 Jul 2020 • Chathura Widanage, Niranda Perera, Vibhatha Abeykoon, Supun Kamburugamuve, Thejaka Amila Kanewala, Hasara Maithree, Pulasthi Wickramasinghe, Ahmet Uyar, Gurhan Gunduz, Geoffrey Fox
In this paper we present Cylon, an open-source high performance distributed data processing library that can be seamlessly integrated with existing Big Data and AI/ML frameworks.
Distributed, Parallel, and Cluster Computing Databases
2 code implementations • 12 Nov 2019 • Vibhatha Abeykoon, Zhengchun Liu, Rajkumar Kettimuthu, Geoffrey Fox, Ian Foster
We explore this question by evaluating the performance and accuracy of a scientific image restoration model, for which both model input and output are images, on edge computing devices.
no code implementations • 29 Sep 2019 • Geoffrey Fox, Shantenu Jha
We present a taxonomy of research on Machine Learning (ML) applied to enhance simulations together with a catalog of some activities.
no code implementations • 5 Sep 2019 • Geoffrey Fox, Shantenu Jha
We recently outlined the vision of "Learning Everywhere" which captures the possibility and impact of how learning methods and traditional HPC methods can be coupled together.
no code implementations • 3 May 2019 • Vibhatha Abeykoon, Geoffrey Fox, Minje Kim
In this research, we identify the bottlenecks in model synchronization in parallel stochastic gradient descent (PSGD)-based SVM algorithm with respect to the training model synchronization frequency (MSF).