Search Results for author: Georges El Fakhri

Found 37 papers, 1 papers with code

Speech Map: A Statistical Multimodal Atlas of 4D Tongue Motion During Speech from Tagged and Cine MR Images

no code implementations24 Jan 2017 Jonghye Woo, Fangxu Xing, Maureen Stone, Jordan Green, Timothy G. Reese, Thomas J. Brady, Van J. Wedeen, Jerry L. Prince, Georges El Fakhri

Quantitative measurement of functional and anatomical traits of 4D tongue motion in the course of speech or other lingual behaviors remains a major challenge in scientific research and clinical applications.

Motion Estimation

A Cascaded Convolutional Neural Network for X-ray Low-dose CT Image Denoising

no code implementations11 May 2017 Dufan Wu, Kyungsang Kim, Georges El Fakhri, Quanzheng Li

Image denoising techniques are essential to reducing noise levels and enhancing diagnosis reliability in low-dose computed tomography (CT).

Computed Tomography (CT) Image Denoising

Iterative PET Image Reconstruction Using Convolutional Neural Network Representation

1 code implementation9 Oct 2017 Kuang Gong, Jiahui Guan, Kyungsang Kim, Xuezhu Zhang, Georges El Fakhri, Jinyi Qi, Quanzheng Li

An innovative feature of the proposed method is that we embed the neural network in the iterative reconstruction framework for image representation, rather than using it as a post-processing tool.

Denoising Image Reconstruction

End-to-end Lung Nodule Detection in Computed Tomography

no code implementations6 Nov 2017 Dufan Wu, Kyungsang Kim, Bin Dong, Georges El Fakhri, Quanzheng Li

With 144 multi-slice fanbeam pro-jections, the proposed end-to-end detector could achieve comparable sensitivity with the reference detector, which was trained and applied on the fully-sampled image data.

Computed Tomography (CT) Lung Nodule Detection

Attenuation correction for brain PET imaging using deep neural network based on dixon and ZTE MR images

no code implementations17 Dec 2017 Kuang Gong, Jaewon Yang, Kyungsang Kim, Georges El Fakhri, Youngho Seo, Quanzheng Li

With only Dixon MR images as the network input, the existing U-net structure was adopted and analysis using forty patient data sets shows it is superior than other Dixon based methods.

Image Reconstruction

A Sparse Non-negative Matrix Factorization Framework for Identifying Functional Units of Tongue Behavior from MRI

no code implementations15 Apr 2018 Jonghye Woo, Jerry L. Prince, Maureen Stone, Fangxu Xing, Arnold Gomez, Jordan R. Green, Christopher J. Hartnick, Thomas J. Brady, Timothy G. Reese, Van J. Wedeen, Georges El Fakhri

We then use three-dimensional synthetic and \textit{in vivo} tongue motion data using protrusion and simple speech tasks to identify subject-specific and data-driven functional units of the tongue in localized regions.

Clustering

A Deep Joint Sparse Non-negative Matrix Factorization Framework for Identifying the Common and Subject-specific Functional Units of Tongue Motion During Speech

no code implementations9 Jul 2020 Jonghye Woo, Fangxu Xing, Jerry L. Prince, Maureen Stone, Arnold Gomez, Timothy G. Reese, Van J. Wedeen, Georges El Fakhri

Experiments carried out with in vivo tongue motion data show that the proposed method can determine the common and subject-specific functional units with increased interpretability and decreased size variability.

Clustering

Subtype-aware Unsupervised Domain Adaptation for Medical Diagnosis

no code implementations1 Jan 2021 Xiaofeng Liu, Xiongchang Liu, Bo Hu, Wenxuan Ji, Fangxu Xing, Jun Lu, Jane You, C. -C. Jay Kuo, Georges El Fakhri, Jonghye Woo

Recent advances in unsupervised domain adaptation (UDA) show that transferable prototypical learning presents a powerful means for class conditional alignment, which encourages the closeness of cross-domain class centroids.

Medical Diagnosis Unsupervised Domain Adaptation

VoxelHop: Successive Subspace Learning for ALS Disease Classification Using Structural MRI

no code implementations13 Jan 2021 Xiaofeng Liu, Fangxu Xing, Chao Yang, C. -C. Jay Kuo, Suma Babu, Georges El Fakhri, Thomas Jenkins, Jonghye Woo

Deep learning has great potential for accurate detection and classification of diseases with medical imaging data, but the performance is often limited by the number of training datasets and memory requirements.

Classification Dimensionality Reduction +1

A Unified Conditional Disentanglement Framework for Multimodal Brain MR Image Translation

no code implementations14 Jan 2021 Xiaofeng Liu, Fangxu Xing, Georges El Fakhri, Jonghye Woo

Our framework hinges on a cycle-constrained conditional adversarial training approach, where it can extract a modality-invariant anatomical feature with a modality-agnostic encoder and generate a target modality with a conditioned decoder.

Disentanglement Translation +1

Adapting Off-the-Shelf Source Segmenter for Target Medical Image Segmentation

no code implementations23 Jun 2021 Xiaofeng Liu, Fangxu Xing, Chao Yang, Georges El Fakhri, Jonghye Woo

To alleviate this, in this work, we target source free UDA for segmentation, and propose to adapt an ``off-the-shelf" segmentation model pre-trained in the source domain to the target domain, with an adaptive batch-wise normalization statistics adaptation framework.

Image Segmentation Medical Image Segmentation +3

Generative Self-training for Cross-domain Unsupervised Tagged-to-Cine MRI Synthesis

no code implementations23 Jun 2021 Xiaofeng Liu, Fangxu Xing, Maureen Stone, Jiachen Zhuo, Reese Timothy, Jerry L. Prince, Georges El Fakhri, Jonghye Woo

Self-training based unsupervised domain adaptation (UDA) has shown great potential to address the problem of domain shift, when applying a trained deep learning model in a source domain to unlabeled target domains.

Image Generation Pseudo Label +3

Segmentation of Cardiac Structures via Successive Subspace Learning with Saab Transform from Cine MRI

no code implementations22 Jul 2021 Xiaofeng Liu, Fangxu Xing, Hanna K. Gaggin, Weichung Wang, C. -C. Jay Kuo, Georges El Fakhri, Jonghye Woo

Assessment of cardiovascular disease (CVD) with cine magnetic resonance imaging (MRI) has been used to non-invasively evaluate detailed cardiac structure and function.

Dimensionality Reduction feature selection +2

Domain Generalization under Conditional and Label Shifts via Variational Bayesian Inference

no code implementations22 Jul 2021 Xiaofeng Liu, Bo Hu, Linghao Jin, Xu Han, Fangxu Xing, Jinsong Ouyang, Jun Lu, Georges El Fakhri, Jonghye Woo

In this work, we propose a domain generalization (DG) approach to learn on several labeled source domains and transfer knowledge to a target domain that is inaccessible in training.

Bayesian Inference Domain Generalization

Adversarial Unsupervised Domain Adaptation with Conditional and Label Shift: Infer, Align and Iterate

no code implementations ICCV 2021 Xiaofeng Liu, Zhenhua Guo, Site Li, Fangxu Xing, Jane You, C. -C. Jay Kuo, Georges El Fakhri, Jonghye Woo

In this work, we propose an adversarial unsupervised domain adaptation (UDA) approach with the inherent conditional and label shifts, in which we aim to align the distributions w. r. t.

Unsupervised Domain Adaptation

Self-semantic contour adaptation for cross modality brain tumor segmentation

no code implementations13 Jan 2022 Xiaofeng Liu, Fangxu Xing, Georges El Fakhri, Jonghye Woo

Unsupervised domain adaptation (UDA) between two significantly disparate domains to learn high-level semantic alignment is a crucial yet challenging task.~To this end, in this work, we propose exploiting low-level edge information to facilitate the adaptation as a precursor task, which has a small cross-domain gap, compared with semantic segmentation.~The precise contour then provides spatial information to guide the semantic adaptation.

Brain Tumor Segmentation Segmentation +2

Variational Inference for Quantifying Inter-observer Variability in Segmentation of Anatomical Structures

no code implementations18 Jan 2022 Xiaofeng Liu, Fangxu Xing, Thibault Marin, Georges El Fakhri, Jonghye Woo

Then, we apply a variational autoencoder network and optimize its evidence lower bound (ELBO) to efficiently approximate the distribution of the segmentation map, given an MR image.

MRI segmentation Segmentation +1

Structure-aware Unsupervised Tagged-to-Cine MRI Synthesis with Self Disentanglement

no code implementations25 Feb 2022 Xiaofeng Liu, Fangxu Xing, Jerry L. Prince, Maureen Stone, Georges El Fakhri, Jonghye Woo

Specifically, we propose a novel input-output image patches self-training scheme to achieve a disentanglement of underlying anatomical structures and imaging modalities.

Disentanglement Style Transfer

Tagged-MRI Sequence to Audio Synthesis via Self Residual Attention Guided Heterogeneous Translator

no code implementations5 Jun 2022 Xiaofeng Liu, Fangxu Xing, Jerry L. Prince, Jiachen Zhuo, Maureen Stone, Georges El Fakhri, Jonghye Woo

Understanding the underlying relationship between tongue and oropharyngeal muscle deformation seen in tagged-MRI and intelligible speech plays an important role in advancing speech motor control theories and treatment of speech related-disorders.

Audio Synthesis Disentanglement

ACT: Semi-supervised Domain-adaptive Medical Image Segmentation with Asymmetric Co-training

no code implementations5 Jun 2022 Xiaofeng Liu, Fangxu Xing, Nadya Shusharina, Ruth Lim, C-C Jay Kuo, Georges El Fakhri, Jonghye Woo

Unsupervised domain adaptation (UDA) has been vastly explored to alleviate domain shifts between source and target domains, by applying a well-performed model in an unlabeled target domain via supervision of a labeled source domain.

Image Segmentation MRI segmentation +4

Deep Unsupervised Domain Adaptation: A Review of Recent Advances and Perspectives

no code implementations15 Aug 2022 Xiaofeng Liu, Chaehwa Yoo, Fangxu Xing, Hyejin Oh, Georges El Fakhri, Je-Won Kang, Jonghye Woo

Unsupervised domain adaptation (UDA) is proposed to counter this, by leveraging both labeled source domain data and unlabeled target domain data to carry out various tasks in the target domain.

Domain Generalization Out-of-Distribution Detection +3

Unsupervised Domain Adaptation for Segmentation with Black-box Source Model

no code implementations16 Aug 2022 Xiaofeng Liu, Chaehwa Yoo, Fangxu Xing, C. -C. Jay Kuo, Georges El Fakhri, Jonghye Woo

Unsupervised domain adaptation (UDA) has been widely used to transfer knowledge from a labeled source domain to an unlabeled target domain to counter the difficulty of labeling in a new domain.

Knowledge Distillation Segmentation +1

Subtype-Aware Dynamic Unsupervised Domain Adaptation

no code implementations16 Aug 2022 Xiaofeng Liu, Fangxu Xing, Jia You, Jun Lu, C. -C. Jay Kuo, Georges El Fakhri, Jonghye Woo

In TPN, while the closeness of class centers between source and target domains is explicitly enforced in a latent space, the underlying fine-grained subtype structure and the cross-domain within-class compactness have not been fully investigated.

Unsupervised Domain Adaptation

PET image denoising based on denoising diffusion probabilistic models

no code implementations13 Sep 2022 Kuang Gong, Keith A. Johnson, Georges El Fakhri, Quanzheng Li, Tinsu Pan

Regional and surface quantification shows that employing MR prior as the network input while embedding PET image as a data-consistency constraint during inference can achieve the best performance.

Image Denoising

Memory Consistent Unsupervised Off-the-Shelf Model Adaptation for Source-Relaxed Medical Image Segmentation

no code implementations16 Sep 2022 Xiaofeng Liu, Fangxu Xing, Georges El Fakhri, Jonghye Woo

Unsupervised domain adaptation (UDA) has been a vital protocol for migrating information learned from a labeled source domain to facilitate the implementation in an unlabeled heterogeneous target domain.

Brain Tumor Segmentation Image Segmentation +4

Successive Subspace Learning for Cardiac Disease Classification with Two-phase Deformation Fields from Cine MRI

no code implementations21 Jan 2023 Xiaofeng Liu, Fangxu Xing, Hanna K. Gaggin, C. -C. Jay Kuo, Georges El Fakhri, Jonghye Woo

Cardiac cine magnetic resonance imaging (MRI) has been used to characterize cardiovascular diseases (CVD), often providing a noninvasive phenotyping tool.~While recently flourished deep learning based approaches using cine MRI yield accurate characterization results, the performance is often degraded by small training samples.

Synthesizing audio from tongue motion during speech using tagged MRI via transformer

no code implementations14 Feb 2023 Xiaofeng Liu, Fangxu Xing, Jerry L. Prince, Maureen Stone, Georges El Fakhri, Jonghye Woo

However, elucidating the relationship between these two sources of information is challenging, due in part to the disparity in data structure between spatiotemporal motion fields (i. e., 4D motion fields) and one-dimensional audio waveforms.

Posterior Estimation Using Deep Learning: A Simulation Study of Compartmental Modeling in Dynamic PET

no code implementations17 Mar 2023 Xiaofeng Liu, Thibault Marin, Tiss Amal, Jonghye Woo, Georges El Fakhri, Jinsong Ouyang

Purpose: This work aims at using deep learning to efficiently estimate posterior distributions of imaging parameters, which in turn can be used to derive the most probable parameters as well as their uncertainties.

Bayesian Inference

Attentive Continuous Generative Self-training for Unsupervised Domain Adaptive Medical Image Translation

no code implementations23 May 2023 Xiaofeng Liu, Jerry L. Prince, Fangxu Xing, Jiachen Zhuo, Reese Timothy, Maureen Stone, Georges El Fakhri, Jonghye Woo

We evaluated our framework on two cross-scanner/center, inter-subject translation tasks, including tagged-to-cine magnetic resonance (MR) image translation and T1-weighted MR-to-fractional anisotropy translation.

Pseudo Label Pseudo Label Filtering +3

Incremental Learning for Heterogeneous Structure Segmentation in Brain Tumor MRI

no code implementations30 May 2023 Xiaofeng Liu, Helen A. Shih, Fangxu Xing, Emiliano Santarnecchi, Georges El Fakhri, Jonghye Woo

Deep learning (DL) models for segmenting various anatomical structures have achieved great success via a static DL model that is trained in a single source domain.

Brain Tumor Segmentation Incremental Learning +3

TauPETGen: Text-Conditional Tau PET Image Synthesis Based on Latent Diffusion Models

no code implementations21 Jun 2023 Se-In Jang, Cristina Lois, Emma Thibault, J. Alex Becker, Yafei Dong, Marc D. Normandin, Julie C. Price, Keith A. Johnson, Georges El Fakhri, Kuang Gong

Preliminary experimental results based on clinical [18F]MK-6240 datasets demonstrate the feasibility of the proposed method in generating realistic tau PET images at different clinical stages.

Image Generation

Disentangled Multimodal Brain MR Image Translation via Transformer-based Modality Infuser

no code implementations1 Feb 2024 Jihoon Cho, Xiaofeng Liu, Fangxu Xing, Jinsong Ouyang, Georges El Fakhri, Jinah Park, Jonghye Woo

Multimodal Magnetic Resonance (MR) Imaging plays a crucial role in disease diagnosis due to its ability to provide complementary information by analyzing a relationship between multimodal images on the same subject.

Brain Tumor Segmentation Translation +1

Treatment-wise Glioblastoma Survival Inference with Multi-parametric Preoperative MRI

no code implementations10 Feb 2024 Xiaofeng Liu, Nadya Shusharina, Helen A Shih, C. -C. Jay Kuo, Georges El Fakhri, Jonghye Woo

In this work, we aim to predict the survival time (ST) of glioblastoma (GBM) patients undergoing different treatments based on preoperative magnetic resonance (MR) scans.

Speech motion anomaly detection via cross-modal translation of 4D motion fields from tagged MRI

no code implementations10 Feb 2024 Xiaofeng Liu, Fangxu Xing, Jiachen Zhuo, Maureen Stone, Jerry L. Prince, Georges El Fakhri, Jonghye Woo

In this work, we aim to develop a framework for detecting speech motion anomalies in conjunction with their corresponding speech acoustics.

Anomaly Detection

Cannot find the paper you are looking for? You can Submit a new open access paper.