1 code implementation • 7 Jun 2017 • Giulio Caravagna, Daniele Ramazzotti
Learning the structure of dependencies among multiple random variables is a problem of considerable theoretical and practical interest.
1 code implementation • 4 Sep 2017 • Daniele Ramazzotti, Alex Graudenzi, Luca De Sano, Marco Antoniotti, Giulio Caravagna
Compared to other tools, TRaIT supports multi-region and single-cell sequencing data within the same statistical framework, and delivers expressive models that capture many complex evolutionary phenomena.
2 code implementations • 26 Aug 2014 • Fabrizio Angaroni, Kevin Chen, Chiara Damiani, Giulio Caravagna, Alex Graudenzi, Daniele Ramazzotti
Motivation: Driver (epi)genomic alterations underlie the positive selection of cancer subpopulations, which promotes drug resistance and relapse.
no code implementations • 25 Feb 2016 • Daniele Ramazzotti, Alex Graudenzi, Giulio Caravagna, Marco Antoniotti
Several diseases related to cell proliferation are characterized by the accumulation of somatic DNA changes, with respect to wildtype conditions.
no code implementations • 7 May 2016 • Giulio Caravagna, Luca Bortolussi, Guido Sanguinetti
Biological systems are often modelled at different levels of abstraction depending on the particular aims/resources of a study.
no code implementations • 27 Sep 2013 • Alex Graudenzi, Giulio Caravagna, Giancarlo Mauri, Marco Antoniotti
The Wivace 2013 Electronic Proceedings in Theoretical Computer Science (EPTCS) contain some selected long and short articles accepted for the presentation at Wivace 2013 - Italian Workshop on Artificial Life and Evolutionary Computation, which was held at the University of Milan-Bicocca, Milan, on the 1st and 2nd of July, 2013.
2 code implementations • 8 May 2017 • Lucrezia Patruno, Edoardo Galimberti, Daniele Ramazzotti, Giulio Caravagna, Luca De Sano, Marco Antoniotti, Alex Graudenzi
cyTRON was developed in Java; the code is available at https://github. com/BIMIB-DISCo/cyTRON and on the Cytoscape App Store http://apps. cytoscape. org/apps/cytron.