no code implementations • 26 Jun 2015 • Gregory J. Puleo, Olgica Milenkovic
We consider a generalized version of the correlation clustering problem, defined as follows.
no code implementations • 25 Jan 2016 • Jack P. Hou, Amin Emad, Gregory J. Puleo, Jian Ma, Olgica Milenkovic
To test $C^3$, we performed a detailed analysis on TCGA breast cancer and glioblastoma data and showed that our algorithm outperforms the state-of-the-art CoMEt method in terms of discovering mutually exclusive gene modules and identifying driver genes.
no code implementations • 3 Nov 2014 • Gregory J. Puleo, Olgica Milenkovic
We consider the problem of correlation clustering on graphs with constraints on both the cluster sizes and the positive and negative weights of edges.
no code implementations • 5 Nov 2018 • Pan Li, Gregory J. Puleo, Olgica Milenkovic
Our contributions are as follows: We first introduce several variants of motif correlation clustering and then show that these clustering problems are NP-hard.
no code implementations • 13 Nov 2013 • Wes Maciejewski, Gregory J. Puleo
Understanding the influence of an environment on the evolution of its resident population is a major challenge in evolutionary biology.
Populations and Evolution