Search Results for author: Guang Yang

Found 146 papers, 38 papers with code

Diff-UNet: A Diffusion Embedded Network for Volumetric Segmentation

1 code implementation18 Mar 2023 Zhaohu Xing, Liang Wan, Huazhu Fu, Guang Yang, Lei Zhu

Our experimental results also indicate the universality and effectiveness of the proposed model.

Denoising Segmentation

Swin Transformer for Fast MRI

2 code implementations10 Jan 2022 Jiahao Huang, Yingying Fang, Yinzhe Wu, Huanjun Wu, Zhifan Gao, Yang Li, Javier Del Ser, Jun Xia, Guang Yang

The IM and OM were 2D convolutional layers and the FEM was composed of a cascaded of residual Swin transformer blocks (RSTBs) and 2D convolutional layers.

MRI Reconstruction

ChatAgri: Exploring Potentials of ChatGPT on Cross-linguistic Agricultural Text Classification

1 code implementation24 May 2023 Biao Zhao, Weiqiang Jin, Javier Del Ser, Guang Yang

In the era of sustainable smart agriculture, a massive amount of agricultural news text is being posted on the Internet, in which massive agricultural knowledge has been accumulated.

text-classification Text Classification

Adversarial and Perceptual Refinement for Compressed Sensing MRI Reconstruction

1 code implementation28 Jun 2018 Maximilian Seitzer, Guang Yang, Jo Schlemper, Ozan Oktay, Tobias Würfl, Vincent Christlein, Tom Wong, Raad Mohiaddin, David Firmin, Jennifer Keegan, Daniel Rueckert, Andreas Maier

In addition, we introduce a semantic interpretability score, measuring the visibility of the region of interest in both ground truth and reconstructed images, which allows us to objectively quantify the usefulness of the image quality for image post-processing and analysis.

MRI Reconstruction Open-Ended Question Answering

Swin Deformable Attention U-Net Transformer (SDAUT) for Explainable Fast MRI

1 code implementation5 Jul 2022 Jiahao Huang, Xiaodan Xing, Zhifan Gao, Guang Yang

The main obstacle is the computational cost of the self-attention layer, which is the core part of the Transformer, can be expensive for high resolution MRI inputs.

Lesion Focused Super-Resolution

2 code implementations15 Oct 2018 Jin Zhu, Guang Yang, Pietro Lio

Super-resolution (SR) for image enhancement has great importance in medical image applications.

Brain Tumor Segmentation Image Enhancement +3

MIASSR: An Approach for Medical Image Arbitrary Scale Super-Resolution

1 code implementation22 May 2021 Jin Zhu, Chuan Tan, Junwei Yang, Guang Yang, Pietro Lio'

We also employ transfer learning to enable MIASSR to tackle SR tasks of new medical modalities, such as cardiac MR images (ACDC) and chest computed tomography images (COVID-CT).

Image Super-Resolution Meta-Learning +1

Multi-Modal Experience Inspired AI Creation

1 code implementation2 Sep 2022 Qian Cao, Xu Chen, Ruihua Song, Hao Jiang, Guang Yang, Zhao Cao

To model such human capabilities, in this paper, we define and solve a novel AI creation problem based on human experiences.

Text Generation

A residual dense vision transformer for medical image super-resolution with segmentation-based perceptual loss fine-tuning

1 code implementation22 Feb 2023 Jin Zhu, Guang Yang, Pietro Lio

On the other hand, the segmentation-based perceptual loss increases $+0. 14$ dB PSNR on average for SOTA methods, including CNNs and vision transformers.

Image Segmentation Image Super-Resolution +2

Heterogeneous Directed Hypergraph Neural Network over abstract syntax tree (AST) for Code Classification

1 code implementation7 May 2023 Guang Yang, Tiancheng Jin, Liang Dou

In this study, we propose to represent AST as a heterogeneous directed hypergraph (HDHG) and process the graph by heterogeneous directed hypergraph neural network (HDHGN) for code classification.

Code Classification

Fast MRI Reconstruction: How Powerful Transformers Are?

1 code implementation23 Jan 2022 Jiahao Huang, Yinzhe Wu, Huanjun Wu, Guang Yang

In particular, a generative adversarial network (GAN) based Swin transformer (ST-GAN) was introduced for the fast MRI reconstruction.

Generative Adversarial Network MRI Reconstruction

Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge

1 code implementation5 Nov 2018 Spyridon Bakas, Mauricio Reyes, Andras Jakab, Stefan Bauer, Markus Rempfler, Alessandro Crimi, Russell Takeshi Shinohara, Christoph Berger, Sung Min Ha, Martin Rozycki, Marcel Prastawa, Esther Alberts, Jana Lipkova, John Freymann, Justin Kirby, Michel Bilello, Hassan Fathallah-Shaykh, Roland Wiest, Jan Kirschke, Benedikt Wiestler, Rivka Colen, Aikaterini Kotrotsou, Pamela Lamontagne, Daniel Marcus, Mikhail Milchenko, Arash Nazeri, Marc-Andre Weber, Abhishek Mahajan, Ujjwal Baid, Elizabeth Gerstner, Dongjin Kwon, Gagan Acharya, Manu Agarwal, Mahbubul Alam, Alberto Albiol, Antonio Albiol, Francisco J. Albiol, Varghese Alex, Nigel Allinson, Pedro H. A. Amorim, Abhijit Amrutkar, Ganesh Anand, Simon Andermatt, Tal Arbel, Pablo Arbelaez, Aaron Avery, Muneeza Azmat, Pranjal B., W Bai, Subhashis Banerjee, Bill Barth, Thomas Batchelder, Kayhan Batmanghelich, Enzo Battistella, Andrew Beers, Mikhail Belyaev, Martin Bendszus, Eze Benson, Jose Bernal, Halandur Nagaraja Bharath, George Biros, Sotirios Bisdas, James Brown, Mariano Cabezas, Shilei Cao, Jorge M. Cardoso, Eric N Carver, Adrià Casamitjana, Laura Silvana Castillo, Marcel Catà, Philippe Cattin, Albert Cerigues, Vinicius S. Chagas, Siddhartha Chandra, Yi-Ju Chang, Shiyu Chang, Ken Chang, Joseph Chazalon, Shengcong Chen, Wei Chen, Jefferson W. Chen, Zhaolin Chen, Kun Cheng, Ahana Roy Choudhury, Roger Chylla, Albert Clérigues, Steven Colleman, Ramiro German Rodriguez Colmeiro, Marc Combalia, Anthony Costa, Xiaomeng Cui, Zhenzhen Dai, Lutao Dai, Laura Alexandra Daza, Eric Deutsch, Changxing Ding, Chao Dong, Shidu Dong, Wojciech Dudzik, Zach Eaton-Rosen, Gary Egan, Guilherme Escudero, Théo Estienne, Richard Everson, Jonathan Fabrizio, Yong Fan, Longwei Fang, Xue Feng, Enzo Ferrante, Lucas Fidon, Martin Fischer, Andrew P. French, Naomi Fridman, Huan Fu, David Fuentes, Yaozong Gao, Evan Gates, David Gering, Amir Gholami, Willi Gierke, Ben Glocker, Mingming Gong, Sandra González-Villá, T. Grosges, Yuanfang Guan, Sheng Guo, Sudeep Gupta, Woo-Sup Han, Il Song Han, Konstantin Harmuth, Huiguang He, Aura Hernández-Sabaté, Evelyn Herrmann, Naveen Himthani, Winston Hsu, Cheyu Hsu, Xiaojun Hu, Xiaobin Hu, Yan Hu, Yifan Hu, Rui Hua, Teng-Yi Huang, Weilin Huang, Sabine Van Huffel, Quan Huo, Vivek HV, Khan M. Iftekharuddin, Fabian Isensee, Mobarakol Islam, Aaron S. Jackson, Sachin R. Jambawalikar, Andrew Jesson, Weijian Jian, Peter Jin, V Jeya Maria Jose, Alain Jungo, B Kainz, Konstantinos Kamnitsas, Po-Yu Kao, Ayush Karnawat, Thomas Kellermeier, Adel Kermi, Kurt Keutzer, Mohamed Tarek Khadir, Mahendra Khened, Philipp Kickingereder, Geena Kim, Nik King, Haley Knapp, Urspeter Knecht, Lisa Kohli, Deren Kong, Xiangmao Kong, Simon Koppers, Avinash Kori, Ganapathy Krishnamurthi, Egor Krivov, Piyush Kumar, Kaisar Kushibar, Dmitrii Lachinov, Tryphon Lambrou, Joon Lee, Chengen Lee, Yuehchou Lee, M Lee, Szidonia Lefkovits, Laszlo Lefkovits, James Levitt, Tengfei Li, Hongwei Li, Hongyang Li, Xiaochuan Li, Yuexiang Li, Heng Li, Zhenye Li, Xiaoyu Li, Zeju Li, Xiaogang Li, Wenqi Li, Zheng-Shen Lin, Fengming Lin, Pietro Lio, Chang Liu, Boqiang Liu, Xiang Liu, Mingyuan Liu, Ju Liu, Luyan Liu, Xavier Llado, Marc Moreno Lopez, Pablo Ribalta Lorenzo, Zhentai Lu, Lin Luo, Zhigang Luo, Jun Ma, Kai Ma, Thomas Mackie, Anant Madabushi, Issam Mahmoudi, Klaus H. Maier-Hein, Pradipta Maji, CP Mammen, Andreas Mang, B. S. Manjunath, Michal Marcinkiewicz, S McDonagh, Stephen McKenna, Richard McKinley, Miriam Mehl, Sachin Mehta, Raghav Mehta, Raphael Meier, Christoph Meinel, Dorit Merhof, Craig Meyer, Robert Miller, Sushmita Mitra, Aliasgar Moiyadi, David Molina-Garcia, Miguel A. B. Monteiro, Grzegorz Mrukwa, Andriy Myronenko, Jakub Nalepa, Thuyen Ngo, Dong Nie, Holly Ning, Chen Niu, Nicholas K Nuechterlein, Eric Oermann, Arlindo Oliveira, Diego D. C. Oliveira, Arnau Oliver, Alexander F. I. Osman, Yu-Nian Ou, Sebastien Ourselin, Nikos Paragios, Moo Sung Park, Brad Paschke, J. Gregory Pauloski, Kamlesh Pawar, Nick Pawlowski, Linmin Pei, Suting Peng, Silvio M. Pereira, Julian Perez-Beteta, Victor M. Perez-Garcia, Simon Pezold, Bao Pham, Ashish Phophalia, Gemma Piella, G. N. Pillai, Marie Piraud, Maxim Pisov, Anmol Popli, Michael P. Pound, Reza Pourreza, Prateek Prasanna, Vesna Prkovska, Tony P. Pridmore, Santi Puch, Élodie Puybareau, Buyue Qian, Xu Qiao, Martin Rajchl, Swapnil Rane, Michael Rebsamen, Hongliang Ren, Xuhua Ren, Karthik Revanuru, Mina Rezaei, Oliver Rippel, Luis Carlos Rivera, Charlotte Robert, Bruce Rosen, Daniel Rueckert, Mohammed Safwan, Mostafa Salem, Joaquim Salvi, Irina Sanchez, Irina Sánchez, Heitor M. Santos, Emmett Sartor, Dawid Schellingerhout, Klaudius Scheufele, Matthew R. Scott, Artur A. Scussel, Sara Sedlar, Juan Pablo Serrano-Rubio, N. Jon Shah, Nameetha Shah, Mazhar Shaikh, B. Uma Shankar, Zeina Shboul, Haipeng Shen, Dinggang Shen, Linlin Shen, Haocheng Shen, Varun Shenoy, Feng Shi, Hyung Eun Shin, Hai Shu, Diana Sima, M Sinclair, Orjan Smedby, James M. Snyder, Mohammadreza Soltaninejad, Guidong Song, Mehul Soni, Jean Stawiaski, Shashank Subramanian, Li Sun, Roger Sun, Jiawei Sun, Kay Sun, Yu Sun, Guoxia Sun, Shuang Sun, Yannick R Suter, Laszlo Szilagyi, Sanjay Talbar, DaCheng Tao, Zhongzhao Teng, Siddhesh Thakur, Meenakshi H Thakur, Sameer Tharakan, Pallavi Tiwari, Guillaume Tochon, Tuan Tran, Yuhsiang M. Tsai, Kuan-Lun Tseng, Tran Anh Tuan, Vadim Turlapov, Nicholas Tustison, Maria Vakalopoulou, Sergi Valverde, Rami Vanguri, Evgeny Vasiliev, Jonathan Ventura, Luis Vera, Tom Vercauteren, C. A. Verrastro, Lasitha Vidyaratne, Veronica Vilaplana, Ajeet Vivekanandan, Qian Wang, Chiatse J. Wang, Wei-Chung Wang, Duo Wang, Ruixuan Wang, Yuanyuan Wang, Chunliang Wang, Guotai Wang, Ning Wen, Xin Wen, Leon Weninger, Wolfgang Wick, Shaocheng Wu, Qiang Wu, Yihong Wu, Yong Xia, Yanwu Xu, Xiaowen Xu, Peiyuan Xu, Tsai-Ling Yang, Xiaoping Yang, Hao-Yu Yang, Junlin Yang, Haojin Yang, Guang Yang, Hongdou Yao, Xujiong Ye, Changchang Yin, Brett Young-Moxon, Jinhua Yu, Xiangyu Yue, Songtao Zhang, Angela Zhang, Kun Zhang, Xue-jie Zhang, Lichi Zhang, Xiaoyue Zhang, Yazhuo Zhang, Lei Zhang, Jian-Guo Zhang, Xiang Zhang, Tianhao Zhang, Sicheng Zhao, Yu Zhao, Xiaomei Zhao, Liang Zhao, Yefeng Zheng, Liming Zhong, Chenhong Zhou, Xiaobing Zhou, Fan Zhou, Hongtu Zhu, Jin Zhu, Ying Zhuge, Weiwei Zong, Jayashree Kalpathy-Cramer, Keyvan Farahani, Christos Davatzikos, Koen van Leemput, Bjoern Menze

This study assesses the state-of-the-art machine learning (ML) methods used for brain tumor image analysis in mpMRI scans, during the last seven instances of the International Brain Tumor Segmentation (BraTS) challenge, i. e., 2012-2018.

Brain Tumor Segmentation Survival Prediction +1

Adaptive Hierarchical Dual Consistency for Semi-Supervised Left Atrium Segmentation on Cross-Domain Data

1 code implementation17 Sep 2021 Jun Chen, Heye Zhang, Raad Mohiaddin, Tom Wong, David Firmin, Jennifer Keegan, Guang Yang

For the inter-domain learning, a consistency constraint is applied to the LAs modelled by two dual-modelling networks to exploit the complementary knowledge among different data domains.

Left Atrium Segmentation Segmentation

CDiffMR: Can We Replace the Gaussian Noise with K-Space Undersampling for Fast MRI?

1 code implementation25 Jun 2023 Jiahao Huang, Angelica Aviles-Rivero, Carola-Bibiane Schönlieb, Guang Yang

Different from conventional diffusion models, the degradation operation of our CDiffMR is based on \textit{k}-space undersampling instead of adding Gaussian noise, and the restoration network is trained to harness a de-aliaseing function.

MRI Reconstruction

A Multi-scale Information Integration Framework for Infrared and Visible Image Fusion

1 code implementation7 Dec 2023 Guang Yang, Jie Li, Hanxiao Lei, Xinbo Gao

In this study, we propose a multi-scale dual attention (MDA) framework for infrared and visible image fusion, which is designed to measure and integrate complementary information in both structure and loss function at the image and patch level.

Infrared And Visible Image Fusion

DRAG: Dynamic Region-Aware GCN for Privacy-Leaking Image Detection

1 code implementation17 Mar 2022 Guang Yang, Juan Cao, Qiang Sheng, Peng Qi, Xirong Li, Jintao Li

However, these methods have two limitations: 1) they neglect other important elements like scenes, textures, and objects beyond the capacity of pretrained object detectors; 2) the correlation among objects is fixed, but a fixed correlation is not appropriate for all the images.

Is Autoencoder Truly Applicable for 3D CT Super-Resolution?

1 code implementation23 Jan 2023 Weixun Luo, Xiaodan Xing, Guang Yang

Our work is the first comparative study investigating the suitability of AE architecture for 3D CT SISR tasks and brings a rationale for researchers to re-think the choice of model architectures especially for 3D CT SISR tasks.

Image Super-Resolution

Reducing Spatial Fitting Error in Distillation of Denoising Diffusion Models

1 code implementation7 Nov 2023 Shengzhe Zhou, Zejian Lee, Shengyuan Zhang, Lefan Hou, Changyuan Yang, Guang Yang, Zhiyuan Yang, Lingyun Sun

Based on our analysis with bias-variance decomposition and experimental observations, we attribute the degradation to the spatial fitting error occurring in the training of both the teacher and student model.

Attribute Denoising +2

Transfer Learning Enhanced Generative Adversarial Networks for Multi-Channel MRI Reconstruction

1 code implementation17 May 2021 Jun Lv, Guangyuan Li, Xiangrong Tong, Weibo Chen, Jiahao Huang, Chengyan Wang, Guang Yang

The transfer learning results for the knee and liver were superior to those of the PI-GAN model trained with its own dataset using a smaller number of training cases.

MRI Reconstruction Transfer Learning

SegmentAnything helps microscopy images based automatic and quantitative organoid detection and analysis

1 code implementation8 Sep 2023 Xiaodan Xing, Chunling Tang, Yunzhe Guo, Nicholas Kurniawan, Guang Yang

Organoids are self-organized 3D cell clusters that closely mimic the architecture and function of in vivo tissues and organs.

Drug Discovery

A Dual Domain Multi-exposure Image Fusion Network based on the Spatial-Frequency Integration

1 code implementation17 Dec 2023 Guang Yang, Jie Li, Xinbo Gao

Specifically, we introduce a Spatial-Frequency Fusion Block to facilitate efficient interaction between dual domains and capture complementary information from input images with different exposures.

Multi-Exposure Image Fusion

HDL: Hybrid Deep Learning for the Synthesis of Myocardial Velocity Maps in Digital Twins for Cardiac Analysis

1 code implementation9 Mar 2022 Xiaodan Xing, Javier Del Ser, Yinzhe Wu, Yang Li, Jun Xia, Lei Xu, David Firmin, Peter Gatehouse, Guang Yang

A core part of digital healthcare twins is model-based data synthesis, which permits the generation of realistic medical signals without requiring to cope with the modelling complexity of anatomical and biochemical phenomena producing them in reality.

Decision Making Generative Adversarial Network +1

One for Multiple: Physics-informed Synthetic Data Boosts Generalizable Deep Learning for Fast MRI Reconstruction

1 code implementation25 Jul 2023 Zi Wang, Xiaotong Yu, Chengyan Wang, Weibo Chen, Jiazheng Wang, Ying-Hua Chu, Hongwei Sun, Rushuai Li, Peiyong Li, Fan Yang, Haiwei Han, Taishan Kang, Jianzhong Lin, Chen Yang, Shufu Chang, Zhang Shi, Sha Hua, Yan Li, Juan Hu, Liuhong Zhu, Jianjun Zhou, Meijing Lin, Jiefeng Guo, Congbo Cai, Zhong Chen, Di Guo, Guang Yang, Xiaobo Qu

We demonstrate that training DL models on synthetic data, coupled with enhanced learning techniques, yields in vivo MRI reconstructions comparable to or surpassing those of models trained on matched realistic datasets, reducing the reliance on real-world MRI data by up to 96%.

Medical Diagnosis MRI Reconstruction

Dynamic Multimodal Information Bottleneck for Multimodality Classification

1 code implementation2 Nov 2023 Yingying Fang, Shuang Wu, Sheng Zhang, Chaoyan Huang, Tieyong Zeng, Xiaodan Xing, Simon Walsh, Guang Yang

Specifically, our information bottleneck module serves to filter out the task-irrelevant information and noises in the fused feature, and we further introduce a sufficiency loss to prevent dropping of task-relevant information, thus explicitly preserving the sufficiency of prediction information in the distilled feature.

Classification Medical Diagnosis +1

Stain Consistency Learning: Handling Stain Variation for Automatic Digital Pathology Segmentation

1 code implementation11 Nov 2023 Michael Yeung, Todd Watts, Sean YW Tan, Pedro F. Ferreira, Andrew D. Scott, Sonia Nielles-Vallespin, Guang Yang

Numerous methods have been developed to improve the robustness of machine learning methods to stain variation, but comparative studies have demonstrated limited benefits to performance.

Calibrating the Dice loss to handle neural network overconfidence for biomedical image segmentation

1 code implementation31 Oct 2021 Michael Yeung, Leonardo Rundo, Yang Nan, Evis Sala, Carola-Bibiane Schönlieb, Guang Yang

However, it is well known that the DSC loss is poorly calibrated, resulting in overconfident predictions that cannot be usefully interpreted in biomedical and clinical practice.

Image Segmentation Segmentation +1

Explainable COVID-19 Infections Identification and Delineation Using Calibrated Pseudo Labels

1 code implementation11 Feb 2022 Ming Li, Yingying Fang, Zeyu Tang, Chibudom Onuorah, Jun Xia, Javier Del Ser, Simon Walsh, Guang Yang

We demonstrate the effectiveness of our model with the combination of limited labelled data and sufficient unlabelled data or weakly-labelled data.

Computed Tomography (CT) Decision Making +1

CS$^2$: A Controllable and Simultaneous Synthesizer of Images and Annotations with Minimal Human Intervention

1 code implementation20 Jun 2022 Xiaodan Xing, Jiahao Huang, Yang Nan, Yinzhe Wu, Chengjia Wang, Zhifan Gao, Simon Walsh, Guang Yang

The destitution of image data and corresponding expert annotations limit the training capacities of AI diagnostic models and potentially inhibit their performance.

Image Generation Segmentation

The Beauty or the Beast: Which Aspect of Synthetic Medical Images Deserves Our Focus?

1 code implementation3 May 2023 Xiaodan Xing, Yang Nan, Federico Felder, Simon Walsh, Guang Yang

Training medical AI algorithms requires large volumes of accurately labeled datasets, which are difficult to obtain in the real world.

Multi-scale, Data-driven and Anatomically Constrained Deep Learning Image Registration for Adult and Fetal Echocardiography

1 code implementation2 Sep 2023 Md. Kamrul Hasan, Haobo Zhu, Guang Yang, Choon Hwai Yap

We propose a framework that combines three strategies for DLIR in both fetal and adult echo: (1) an anatomic shape-encoded loss to preserve physiological myocardial and left ventricular anatomical topologies in warped images; (2) a data-driven loss that is trained adversarially to preserve good image texture features in warped images; and (3) a multi-scale training scheme of a data-driven and anatomically constrained algorithm to improve accuracy.

Image Registration Motion Estimation +1

Multiview Two-Task Recursive Attention Model for Left Atrium and Atrial Scars Segmentation

no code implementations12 Jun 2018 Jun Chen, Guang Yang, Zhifan Gao, Hao Ni, Elsa Angelini, Raad Mohiaddin, Tom Wong, Yanping Zhang, Xiuquan Du, Heye Zhang, Jennifer Keegan, David Firmin

Late Gadolinium Enhanced Cardiac MRI (LGE-CMRI) for detecting atrial scars in atrial fibrillation (AF) patients has recently emerged as a promising technique to stratify patients, guide ablation therapy and predict treatment success.

Anatomy Segmentation

A two-stage 3D Unet framework for multi-class segmentation on full resolution image

no code implementations12 Apr 2018 Chengjia Wang, Tom MacGillivray, Gillian Macnaught, Guang Yang, David Newby

Deep convolutional neural networks (CNNs) have been intensively used for multi-class segmentation of data from different modalities and achieved state-of-the-art performances.

Image Super-Resolution Segmentation

Revisiting Skip-Gram Negative Sampling Model with Rectification

no code implementations1 Apr 2018 Cun Mu, Guang Yang, Zheng Yan

We revisit skip-gram negative sampling (SGNS), one of the most popular neural-network based approaches to learning distributed word representation.

Automatic Brain Tumor Detection and Segmentation Using U-Net Based Fully Convolutional Networks

no code implementations10 May 2017 Hao Dong, Guang Yang, Fangde Liu, Yuanhan Mo, Yike Guo

In this context, a reliable fully automatic segmentation method for the brain tumor segmentation is necessary for an efficient measurement of the tumor extent.

Brain Tumor Segmentation Image Segmentation +2

Deep De-Aliasing for Fast Compressive Sensing MRI

no code implementations19 May 2017 Simiao Yu, Hao Dong, Guang Yang, Greg Slabaugh, Pier Luigi Dragotti, Xujiong Ye, Fangde Liu, Simon Arridge, Jennifer Keegan, David Firmin, Yike Guo

Fast Magnetic Resonance Imaging (MRI) is highly in demand for many clinical applications in order to reduce the scanning cost and improve the patient experience.

Compressive Sensing De-aliasing +1

The Deep Poincaré Map: A Novel Approach for Left Ventricle Segmentation

no code implementations27 Mar 2017 Yuanhan Mo, Fangde Liu, Douglas McIlwraith, Guang Yang, Jingqing Zhang, Taigang He, Yike Guo

Our method is evaluated on two datasets, namely the Sunnybrook Cardiac Dataset (SCD) and data from the STACOM 2011 LV segmentation challenge.

Left Ventricle Segmentation LV Segmentation +1

Neural Networks Designing Neural Networks: Multi-Objective Hyper-Parameter Optimization

no code implementations7 Nov 2016 Sean C. Smithson, Guang Yang, Warren J. Gross, Brett H. Meyer

The method is evaluated on the MNIST and CIFAR-10 image datasets, optimizing for both recognition accuracy and computational complexity.

BIG-bench Machine Learning Image Classification +2

Numerical Methods for Coupled Reconstruction and Registration in Digital Breast Tomosynthesis

no code implementations23 Jul 2013 Guang Yang, John H. Hipwell, David J. Hawkes, Simon R. Arridge

We evaluate our methods using various computational digital phantoms, uncompressed breast MR images, and in-vivo DBT simulations.

Image Registration

Towards Practical Visual Search Engine within Elasticsearch

no code implementations23 Jun 2018 Cun Mu, Jun Zhao, Guang Yang, Jing Zhang, Zheng Yan

In this paper, we describe our end-to-end content-based image retrieval system built upon Elasticsearch, a well-known and popular textual search engine.

Content-Based Image Retrieval Retrieval

Generating Magnetic Resonance Spectroscopy Imaging Data of Brain Tumours from Linear, Non-Linear and Deep Learning Models

no code implementations23 Aug 2018 Nathan J Olliverre, Guang Yang, Gregory Slabaugh, Constantino Carlos Reyes-Aldasoro, Eduardo Alonso

Magnetic Resonance Spectroscopy (MRS) provides valuable information to help with the identification and understanding of brain tumors, yet MRS is not a widely available medical imaging modality.

A Machine Learning Approach to Shipping Box Design

no code implementations26 Sep 2018 Guang Yang, Cun Mu

Having the right assortment of shipping boxes in the fulfillment warehouse to pack and ship customer's online orders is an indispensable and integral part of nowadays eCommerce business, as it will not only help maintain a profitable business but also create great experiences for customers.

BIG-bench Machine Learning Clustering +1

Atrial scars segmentation via potential learning in the graph-cuts framework

no code implementations22 Oct 2018 Lei Li, Fuping Wu, Guang Yang, Tom Wong, Raad Mohiaddin, David Firmin, Jenny Keegan, Lingchao Xu, Xiahai Zhuang

Late Gadolinium Enhancement Magnetic Resonance Imaging (LGE MRI) emerged as a routine scan for patients with atrial fibrillation (AF).

Atrial fibrosis quantification based on maximum likelihood estimator of multivariate images

no code implementations22 Oct 2018 Fuping Wu, Lei LI, Guang Yang, Tom Wong, Raad Mohiaddin, David Firmin, Jennifer Keegan, Lingchao Xu, Xiahai Zhuang

We present a fully-automated segmentation and quantification of the left atrial (LA) fibrosis and scars combining two cardiac MRIs, one is the target late gadolinium-enhanced (LGE) image, and the other is an anatomical MRI from the same acquisition session.

Segmentation Texture Classification

Atrial Scar Quantification via Multi-scale CNN in the Graph-cuts Framework

no code implementations21 Feb 2019 Lei Li, Fuping Wu, Guang Yang, Lingchao Xu, Tom Wong, Raad Mohiaddin, David Firmin, Jennifer Keegan, Xiahai Zhuang

Compared with the conventional methods, which are based on the manual delineation of LA for initialization, our method is fully automatic and has demonstrated significantly better Dice score and accuracy (p < 0. 01).

Fast and Exact Nearest Neighbor Search in Hamming Space on Full-Text Search Engines

no code implementations20 Feb 2019 Cun Mu, Jun Zhao, Guang Yang, Binwei Yang, Zheng Yan

A growing interest has been witnessed recently from both academia and industry in building nearest neighbor search (NNS) solutions on top of full-text search engines.

Information Retrieval Representation Learning +1

Direct Quantification for Coronary Artery Stenosis Using Multiview Learning

no code implementations20 Jul 2019 Dong Zhang, Guang Yang, Shu Zhao, Yanping Zhang, Heye Zhang, Shuo Li

The proposed DMQCA model consists of a multiview module with two attention mechanisms, a key-frame module, and a regression module, to achieve direct accurate multiple-index estimation.

Multiview Learning regression

Discriminative Consistent Domain Generation for Semi-supervised Learning

no code implementations24 Jul 2019 Jun Chen, Heye Zhang, Yanping Zhang, Shu Zhao, Raad Mohiaddin, Tom Wong, David Firmin, Guang Yang, Jennifer Keegan

Based on the generated discriminative consistent domain, we can use the unlabeled data to learn the task model along with the labeled data via a consistent image generation.

Anatomy Domain Adaptation +1

MRI Brain Tumor Segmentation using Random Forests and Fully Convolutional Networks

no code implementations13 Sep 2019 Mohammadreza Soltaninejad, Lei Zhang, Tryphon Lambrou, Guang Yang, Nigel Allinson, Xujiong Ye

In this paper, we propose a novel learning based method for automated segmentation of brain tumor in multimodal MRI images, which incorporates two sets of machine -learned and hand crafted features.

Brain Tumor Segmentation Segmentation +1

Distributed and Consistent Multi-Image Feature Matching via QuickMatch

no code implementations29 Oct 2019 Zachary Serlin, Guang Yang, Brandon Sookraj, Calin Belta, Roberto Tron

The centralized QuickMatch algorithm is compared to other standard matching algorithms, while the Distributed QuickMatch algorithm is compared to the centralized algorithm in terms of preservation of match consistency.

Object object-detection +2

Real-Time Edge Intelligence in the Making: A Collaborative Learning Framework via Federated Meta-Learning

no code implementations9 Jan 2020 Sen Lin, Guang Yang, Junshan Zhang

Further, we investigate the convergence of the proposed federated meta-learning algorithm under mild conditions on node similarity and the adaptation performance at the target edge.

Meta-Learning

Simultaneous Left Atrium Anatomy and Scar Segmentations via Deep Learning in Multiview Information with Attention

no code implementations2 Feb 2020 Guang Yang, Jun Chen, Zhifan Gao, Shuo Li, Hao Ni, Elsa Angelini, Tom Wong, Raad Mohiaddin, Eva Nyktari, Ricardo Wage, Lei Xu, Yanping Zhang, Xiuquan Du, Heye Zhang, David Firmin, Jennifer Keegan

Using our MVTT recursive attention model, both the LA anatomy and scar can be segmented accurately (mean Dice score of 93% for the LA anatomy and 87% for the scar segmentations) and efficiently (~0. 27 seconds to simultaneously segment the LA anatomy and scars directly from the 3D LGE CMR dataset with 60-68 2D slices).

Anatomy Segmentation

Weakly Supervised Deep Learning for COVID-19 Infection Detection and Classification from CT Images

no code implementations14 Apr 2020 Shaoping Hu, Yuan Gao, Zhangming Niu, Yinghui Jiang, Lao Li, Xianglu Xiao, Minhao Wang, Evandro Fei Fang, Wade Menpes-Smith, Jun Xia, Hui Ye, Guang Yang

An outbreak of a novel coronavirus disease (i. e., COVID-19) has been recorded in Wuhan, China since late December 2019, which subsequently became pandemic around the world.

General Classification Respiratory Failure

Deep Attentive Wasserstein Generative Adversarial Networks for MRI Reconstruction with Recurrent Context-Awareness

no code implementations23 Jun 2020 Yifeng Guo, Chengjia Wang, Heye Zhang, Guang Yang

The performance of traditional compressive sensing-based MRI (CS-MRI) reconstruction is affected by its slow iterative procedure and noise-induced artefacts.

Compressive Sensing MRI Reconstruction

Annealing Genetic GAN for Minority Oversampling

no code implementations5 Aug 2020 Jingyu Hao, Chengjia Wang, Heye Zhang, Guang Yang

In particular, the generator uses different training strategies to generate multiple offspring and retain the best.

Automated Multi-Channel Segmentation for the 4D Myocardial Velocity Mapping Cardiac MR

no code implementations16 Dec 2020 Yinzhe Wu, Suzan Hatipoglu, Diego Alonso-Álvarez, Peter Gatehouse, David Firmin, Jennifer Keegan, Guang Yang

Based on the results, our method provides compelling evidence for the design and application for the multi-channel image analysis of the 4D MVM CMR data.

Unbox the Black-box for the Medical Explainable AI via Multi-modal and Multi-centre Data Fusion: A Mini-Review, Two Showcases and Beyond

no code implementations3 Feb 2021 Guang Yang, Qinghao Ye, Jun Xia

Explainable Artificial Intelligence (XAI) is an emerging research topic of machine learning aimed at unboxing how AI systems' black-box choices are made.

BIG-bench Machine Learning Decision Making +2

MV-RAN: Multiview recurrent aggregation network for echocardiographic sequences segmentation and full cardiac cycle analysis

no code implementations1 May 2020 Ming Li, Chengjia Wang, Heye Zhang, Guang Yang

In addition, for a better interpretation of pathophysiological processes, clinical decision-making and prognosis, such cardiac anatomy segmentation and quantitative analysis of various clinical indices should ideally be performed for the data covering the full cardiac cycle.

Anatomy Decision Making +1

Explainable AI For COVID-19 CT Classifiers: An Initial Comparison Study

no code implementations25 Apr 2021 Qinghao Ye, Jun Xia, Guang Yang

XAI is an AI model that is programmed to explain its goals, logic, and decision making so that the end users can understand.

Decision Making Explainable Artificial Intelligence (XAI) +1

JAS-GAN: Generative Adversarial Network Based Joint Atrium and Scar Segmentations on Unbalanced Atrial Targets

no code implementations1 May 2021 Jun Chen, Guang Yang, Habib Khan, Heye Zhang, Yanping Zhang, Shu Zhao, Raad Mohiaddin, Tom Wong, David Firmin, Jennifer Keegan

In this paper, we propose an inter-cascade generative adversarial network, namely JAS-GAN, to segment the unbalanced atrial targets from LGE CMR images automatically and accurately in an end-to-end way.

Generative Adversarial Network Segmentation

Generative Adversarial Networks (GAN) Powered Fast Magnetic Resonance Imaging -- Mini Review, Comparison and Perspectives

no code implementations4 May 2021 Guang Yang, Jun Lv, Yutong Chen, Jiahao Huang, Jin Zhu

However, one drawback of MRI is its comparatively slow scanning and reconstruction compared to other image modalities, limiting its usage in some clinical applications when imaging time is critical.

Compressive Sensing MRI Reconstruction

Recent Advances in Fibrosis and Scar Segmentation from Cardiac MRI: A State-of-the-Art Review and Future Perspectives

no code implementations28 Jun 2021 Yinzhe Wu, Zeyu Tang, Binghuan Li, David Firmin, Guang Yang

Late Gadolinium enhancement (LGE) cardiovascular magnetic resonance (CMR) has been successful for its efficacy in guiding the clinical diagnosis and treatment reliably.

Segmentation

RingFed: Reducing Communication Costs in Federated Learning on Non-IID Data

no code implementations19 Jul 2021 Guang Yang, Ke Mu, Chunhe Song, Zhijia Yang, Tierui Gong

Federated learning is a widely used distributed deep learning framework that protects the privacy of each client by exchanging model parameters rather than raw data.

Federated Learning

High-Resolution Pelvic MRI Reconstruction Using a Generative Adversarial Network with Attention and Cyclic Loss

no code implementations21 Jul 2021 Guangyuan Li, Jun Lv, Xiangrong Tong, Chengyan Wang, Guang Yang

Magnetic resonance imaging (MRI) is an important medical imaging modality, but its acquisition speed is quite slow due to the physiological limitations.

Generative Adversarial Network MRI Reconstruction +1

3D AGSE-VNet: An Automatic Brain Tumor MRI Data Segmentation Framework

no code implementations26 Jul 2021 Xi Guan, Guang Yang, Jianming Ye, Weiji Yang, Xiaomei Xu, Weiwei Jiang, Xiaobo Lai

Background: Glioma is the most common brain malignant tumor, with a high morbidity rate and a mortality rate of more than three percent, which seriously endangers human health.

Brain Tumor Segmentation MRI segmentation +2

FA-GAN: Fused Attentive Generative Adversarial Networks for MRI Image Super-Resolution

no code implementations9 Aug 2021 Mingfeng Jiang, Minghao Zhi, Liying Wei, Xiaocheng Yang, Jucheng Zhang, Yongming Li, Pin Wang, Jiahao Huang, Guang Yang

High-resolution magnetic resonance images can provide fine-grained anatomical information, but acquiring such data requires a long scanning time.

Image Super-Resolution SSIM

Temporal Cue Guided Video Highlight Detection With Low-Rank Audio-Visual Fusion

no code implementations ICCV 2021 Qinghao Ye, Xiyue Shen, Yuan Gao, ZiRui Wang, Qi Bi, Ping Li, Guang Yang

Video highlight detection plays an increasingly important role in social media content filtering, however, it remains highly challenging to develop automated video highlight detection methods because of the lack of temporal annotations (i. e., where the highlight moments are in long videos) for supervised learning.

Highlight Detection Model Optimization

Focal Attention Networks: optimising attention for biomedical image segmentation

no code implementations31 Oct 2021 Michael Yeung, Leonardo Rundo, Evis Sala, Carola-Bibiane Schönlieb, Guang Yang

In recent years, there has been increasing interest to incorporate attention into deep learning architectures for biomedical image segmentation.

Image Segmentation Semantic Segmentation

Robust Weakly Supervised Learning for COVID-19 Recognition Using Multi-Center CT Images

no code implementations9 Dec 2021 Qinghao Ye, Yuan Gao, Weiping Ding, Zhangming Niu, Chengjia Wang, Yinghui Jiang, Minhao Wang, Evandro Fei Fang, Wade Menpes-Smith, Jun Xia, Guang Yang

The multi-domain shift problem for the multi-center and multi-scanner studies is therefore nontrivial that is also crucial for a dependable recognition and critical for reproducible and objective diagnosis and prognosis.

Computed Tomography (CT) Weakly-supervised Learning

AI-based Reconstruction for Fast MRI -- A Systematic Review and Meta-analysis

no code implementations23 Dec 2021 Yutong Chen, Carola-Bibiane Schönlieb, Pietro Liò, Tim Leiner, Pier Luigi Dragotti, Ge Wang, Daniel Rueckert, David Firmin, Guang Yang

Compressed sensing (CS) has been playing a key role in accelerating the magnetic resonance imaging (MRI) acquisition process.

Online Attentive Kernel-Based Temporal Difference Learning

no code implementations22 Jan 2022 Guang Yang, Xingguo Chen, Shangdong Yang, Huihui Wang, Shaokang Dong, Yang Gao

Moreover, in learning sparse representations, attention mechanisms are utilized to represent the degree of sparsification, and a smooth attentive function is introduced into the kernel-based VFA.

Acrobot Reinforcement Learning (RL)

DocBed: A Multi-Stage OCR Solution for Documents with Complex Layouts

no code implementations3 Feb 2022 Wenzhen Zhu, Negin Sokhandan, Guang Yang, Sujitha Martin, Suchitra Sathyanarayana

Digitization of newspapers is of interest for many reasons including preservation of history, accessibility and search ability, etc.

Document Layout Analysis Image Segmentation +4

Unsupervised Image Registration Towards Enhancing Performance and Explainability in Cardiac And Brain Image Analysis

no code implementations7 Mar 2022 Chengjia Wang, Guang Yang, Giorgos Papanastasiou

Moreover, inverse-consistency is a fundamental inter-modality registration property that is not considered in deep learning registration algorithms.

Image Generation Unsupervised Image Registration

Automatic Fine-grained Glomerular Lesion Recognition in Kidney Pathology

no code implementations11 Mar 2022 Yang Nan, Fengyi Li, Peng Tang, Guyue Zhang, Caihong Zeng, Guotong Xie, Zhihong Liu, Guang Yang

Recognition of glomeruli lesions is the key for diagnosis and treatment planning in kidney pathology; however, the coexisting glomerular structures such as mesangial regions exacerbate the difficulties of this task.

Fine-Grained Image Classification whole slide images

ME-Net: Multi-Encoder Net Framework for Brain Tumor Segmentation

no code implementations21 Mar 2022 Wenbo Zhang, Guang Yang, He Huang, Weiji Yang, Xiaomei Xu, Yongkai Liu, Xiaobo Lai

Moreover, the serious voxel imbalance between the brain tumor and the background as well as the different sizes and locations of the brain tumor makes the segmentation of 3D images a challenging problem.

Brain Tumor Segmentation Segmentation +1

Data and Physics Driven Learning Models for Fast MRI -- Fundamentals and Methodologies from CNN, GAN to Attention and Transformers

no code implementations1 Apr 2022 Jiahao Huang, Yingying Fang, Yang Nan, Huanjun Wu, Yinzhe Wu, Zhifan Gao, Yang Li, Zidong Wang, Pietro Lio, Daniel Rueckert, Yonina C. Eldar, Guang Yang

Research studies have shown no qualms about using data driven deep learning models for downstream tasks in medical image analysis, e. g., anatomy segmentation and lesion detection, disease diagnosis and prognosis, and treatment planning.

Anatomy Explainable Models +3

Towards Reliable and Explainable AI Model for Solid Pulmonary Nodule Diagnosis

no code implementations8 Apr 2022 Chenglong Wang, Yun Liu, Fen Wang, Chengxiu Zhang, Yida Wang, Mei Yuan, Guang Yang

However, detection and accurate diagnosis of pulmonary nodules depend heavily on the experiences of radiologists and can be a heavy workload for them.

Faster Diffusion Cardiac MRI with Deep Learning-based breath hold reduction

no code implementations21 Jun 2022 Michael Tanzer, Pedro Ferreira, Andrew Scott, Zohya Khalique, Maria Dwornik, Dudley Pennell, Guang Yang, Daniel Rueckert, Sonia Nielles-Vallespin

Diffusion Tensor Cardiac Magnetic Resonance (DT-CMR) enables us to probe the microstructural arrangement of cardiomyocytes within the myocardium in vivo and non-invasively, which no other imaging modality allows.

Ensemble Learning

Explainable AI (XAI) in Biomedical Signal and Image Processing: Promises and Challenges

no code implementations9 Jul 2022 Guang Yang, Arvind Rao, Christine Fernandez-Maloigne, Vince Calhoun, Gloria Menegaz

This paper aims at providing an overview on XAI in biomedical data processing and points to an upcoming Special Issue on Deep Learning in Biomedical Image and Signal Processing of the IEEE Signal Processing Magazine that is going to appear in March 2022.

Explainable Artificial Intelligence (XAI)

Large-Kernel Attention for 3D Medical Image Segmentation

no code implementations19 Jul 2022 Hao Li, Yang Nan, Javier Del Ser, Guang Yang

The performance improvement due to the proposed LK attention module was also statistically validated.

Computed Tomography (CT) Image Segmentation +4

Human Treelike Tubular Structure Segmentation: A Comprehensive Review and Future Perspectives

no code implementations12 Jul 2022 Hao Li, Zeyu Tang, Yang Nan, Guang Yang

Various structures in human physiology follow a treelike morphology, which often expresses complexity at very fine scales.

Computed Tomography (CT)

A Novel Automated Classification and Segmentation for COVID-19 using 3D CT Scans

no code implementations4 Aug 2022 Shiyi Wang, Guang Yang

Medical image classification and segmentation based on deep learning (DL) are emergency research topics for diagnosing variant viruses of the current COVID-19 situation.

Computed Tomography (CT) Image Classification +4

Unsupervised Tissue Segmentation via Deep Constrained Gaussian Network

no code implementations4 Aug 2022 Yang Nan, Peng Tang, Guyue Zhang, Caihong Zeng, Zhihong Liu, Zhifan Gao, Heye Zhang, Guang Yang

However, most machine and deep learning based approaches are supervised and developed using a large number of training samples, in which the pixelwise annotations are expensive and sometimes can be impossible to obtain.

Segmentation

A survey, review, and future trends of skin lesion segmentation and classification

no code implementations25 Aug 2022 Md. Kamrul Hasan, Md. Asif Ahamad, Choon Hwai Yap, Guang Yang

The Computer-aided Diagnosis or Detection (CAD) approach for skin lesion analysis is an emerging field of research that has the potential to alleviate the burden and cost of skin cancer screening.

Lesion Classification Lesion Segmentation +2

Delving into the Frequency: Temporally Consistent Human Motion Transfer in the Fourier Space

no code implementations1 Sep 2022 Guang Yang, Wu Liu, Xinchen Liu, Xiaoyan Gu, Juan Cao, Jintao Li

To close the frequency gap between the natural and synthetic videos, we propose a novel Frequency-based human MOtion TRansfer framework, named FreMOTR, which can effectively mitigate the spatial artifacts and the temporal inconsistency of the synthesized videos.

DeepFake Detection Face Swapping

Review of data types and model dimensionality for cardiac DTI SMS-related artefact removal

1 code implementation20 Sep 2022 Michael Tanzer, Sea Hee Yook, Guang Yang, Daniel Rueckert, Sonia Nielles-Vallespin

As diffusion tensor imaging (DTI) gains popularity in cardiac imaging due to its unique ability to non-invasively assess the cardiac microstructure, deep learning-based Artificial Intelligence is becoming a crucial tool in mitigating some of its drawbacks, such as the long scan times.

Adversarial Transformer for Repairing Human Airway Segmentation

no code implementations21 Oct 2022 Zeyu Tang, Nan Yang, Simon Walsh, Guang Yang

Discontinuity in the delineation of peripheral bronchioles hinders the potential clinical application of automated airway segmentation models.

Segmentation

Deep Kronecker Network

no code implementations24 Oct 2022 Long Feng, Guang Yang

As such, we propose DKN, that is able to i) adapt to low sample size limitation, ii) provide desired model interpretation, and iii) achieve the prediction power as CNN.

regression

Video Event Extraction via Tracking Visual States of Arguments

no code implementations3 Nov 2022 Guang Yang, Manling Li, Jiajie Zhang, Xudong Lin, Shih-Fu Chang, Heng Ji

Video event extraction aims to detect salient events from a video and identify the arguments for each event as well as their semantic roles.

Event Extraction

AMD: Adaptive Masked Distillation for Object Detection

no code implementations31 Jan 2023 Guang Yang, Yin Tang, Jun Li, Jianhua Xu, Xili Wan

As a general model compression paradigm, feature-based knowledge distillation allows the student model to learn expressive features from the teacher counterpart.

Knowledge Distillation Model Compression +3

Hierarchical Perception Adversarial Learning Framework for Compressed Sensing MRI

no code implementations27 Jan 2023 Zhifan Gao, Yifeng Guo, Jiajing Zhang, Tieyong Zeng, Guang Yang

HP-ALF can perceive the image information in the hierarchical mechanism: image-level perception and patch-level perception.

ViGU: Vision GNN U-Net for Fast MRI

no code implementations23 Jan 2023 Jiahao Huang, Angelica Aviles-Rivero, Carola-Bibiane Schonlieb, Guang Yang

The majority of existing deep learning models, e. g., convolutional neural networks, work on data with Euclidean or regular grids structures.

Online Control Barrier Functions for Decentralized Multi-Agent Navigation

no code implementations8 Mar 2023 Zhan Gao, Guang Yang, Amanda Prorok

Control barrier functions (CBFs) enable guaranteed safe multi-agent navigation in the continuous domain.

Robot Navigation

Less is More: Unsupervised Mask-guided Annotated CT Image Synthesis with Minimum Manual Segmentations

no code implementations19 Mar 2023 Xiaodan Xing, Giorgos Papanastasiou, Simon Walsh, Guang Yang

To address these issues, in this work, we propose a novel strategy for medical image synthesis, namely Unsupervised Mask (UM)-guided synthesis, to obtain both synthetic images and segmentations using limited manual segmentation labels.

Data Augmentation Image Generation +1

Deep Learning-based Diffusion Tensor Cardiac Magnetic Resonance Reconstruction: A Comparison Study

no code implementations31 Mar 2023 Jiahao Huang, Pedro F. Ferreira, Lichao Wang, Yinzhe Wu, Angelica I. Aviles-Rivero, Carola-Bibiane Schonlieb, Andrew D. Scott, Zohya Khalique, Maria Dwornik, Ramyah Rajakulasingam, Ranil De Silva, Dudley J. Pennell, Sonia Nielles-Vallespin, Guang Yang

Our results indicate that the models we discussed in this study can be applied for clinical use at an acceleration factor (AF) of $\times 2$ and $\times 4$, with the D5C5 model showing superior fidelity for reconstruction and the SwinMR model providing higher perceptual scores.

MRI Reconstruction

You Don't Have to Be Perfect to Be Amazing: Unveil the Utility of Synthetic Images

no code implementations25 May 2023 Xiaodan Xing, Federico Felder, Yang Nan, Giorgos Papanastasiou, Walsh Simon, Guang Yang

In addition, we have empirically demonstrated that the utility score does not require images with both high fidelity and high variety.

Data Augmentation Image Generation +1

$\mathrm{SAM^{Med}}$: A medical image annotation framework based on large vision model

no code implementations11 Jul 2023 Chenglong Wang, Dexuan Li, Sucheng Wang, Chengxiu Zhang, Yida Wang, Yun Liu, Guang Yang

The $\mathrm{SAM^{assist}}$ demonstrates the generalization ability of SAM to the downstream medical segmentation task using the prompt-learning approach.

Image Segmentation Liver Segmentation +3

Enhancing Super-Resolution Networks through Realistic Thick-Slice CT Simulation

no code implementations2 Jul 2023 Zeyu Tang, Xiaodan Xing, Guang Yang

The generated images were then leveraged to train four distinct super-resolution (SR) models, which were subsequently evaluated using the real thick-slice images from the 2016 Low Dose CT Grand Challenge dataset.

Super-Resolution

Is attention all you need in medical image analysis? A review

no code implementations24 Jul 2023 Giorgos Papanastasiou, Nikolaos Dikaios, Jiahao Huang, Chengjia Wang, Guang Yang

Attention and Transformer compartments (Transf/Attention) which can well maintain properties for modelling global relationships, have been proposed as lighter alternatives of full Transformers.

Video-Instrument Synergistic Network for Referring Video Instrument Segmentation in Robotic Surgery

no code implementations18 Aug 2023 Hongqiu Wang, Lei Zhu, Guang Yang, Yike Guo, Shichen Zhang, Bo Xu, Yueming Jin

Our method is verified on these datasets, and experimental results exhibit that the VIS-Net can significantly outperform existing state-of-the-art referring segmentation methods.

Robot Navigation Segmentation

DMKD: Improving Feature-based Knowledge Distillation for Object Detection Via Dual Masking Augmentation

no code implementations6 Sep 2023 Guang Yang, Yin Tang, Zhijian Wu, Jun Li, Jianhua Xu, Xili Wan

Recent mainstream masked distillation methods function by reconstructing selectively masked areas of a student network from the feature map of its teacher counterpart.

Knowledge Distillation object-detection +1

Real-Time Non-Invasive Imaging and Detection of Spreading Depolarizations through EEG: An Ultra-Light Explainable Deep Learning Approach

no code implementations6 Sep 2023 Yinzhe Wu, Sharon Jewell, Xiaodan Xing, Yang Nan, Anthony J. Strong, Guang Yang, Martyn G. Boutelle

This study presented a novel ultra-light-weight multi-modal deep-learning network to fuse EEG spectrogram imaging and temporal power vectors to enhance SD identification accuracy over each single electrode, allowing flexible EEG map and paving the way for SD detection on ultra-low-density EEG with variable electrode positioning.

EEG

T1/T2 relaxation temporal modelling from accelerated acquisitions using a Latent Transformer

no code implementations28 Sep 2023 Fanwen Wang, Michael Tanzer, Mengyun Qiao, Wenjia Bai, Daniel Rueckert, Guang Yang, Sonia Nielles-Vallespin

Quantitative cardiac magnetic resonance T1 and T2 mapping enable myocardial tissue characterisation but the lengthy scan times restrict their widespread clinical application.

High Accuracy and Cost-Saving Active Learning 3D WD-UNet for Airway Segmentation

no code implementations9 Oct 2023 Shiyi Wang, Yang Nan, Simon Walsh, Guang Yang

We propose a novel Deep Active Learning (DeepAL) model-3D Wasserstein Discriminative UNet (WD-UNet) for reducing the annotation effort of medical 3D Computed Tomography (CT) segmentation.

Active Learning Computed Tomography (CT) +1

Exploiting User Comments for Early Detection of Fake News Prior to Users' Commenting

no code implementations16 Oct 2023 Qiong Nan, Qiang Sheng, Juan Cao, Yongchun Zhu, Danding Wang, Guang Yang, Jintao Li, Kai Shu

To break such a dilemma, a feasible but not well-studied solution is to leverage social contexts (e. g., comments) from historical news for training a detection model and apply it to newly emerging news without social contexts.

Fake News Detection

Data-Free Distillation Improves Efficiency and Privacy in Federated Thorax Disease Analysis

no code implementations22 Oct 2023 Ming Li, Guang Yang

Thorax disease analysis in large-scale, multi-centre, and multi-scanner settings is often limited by strict privacy policies.

Federated Learning Privacy Preserving

The Missing U for Efficient Diffusion Models

no code implementations31 Oct 2023 Sergio Calvo-Ordonez, Chun-Wun Cheng, Jiahao Huang, Lipei Zhang, Guang Yang, Carola-Bibiane Schonlieb, Angelica I Aviles-Rivero

Diffusion Probabilistic Models stand as a critical tool in generative modelling, enabling the generation of complex data distributions.

Denoising Image Generation +1

Post-COVID Highlights: Challenges and Solutions of AI Techniques for Swift Identification of COVID-19

no code implementations24 Sep 2023 Yingying Fang, Xiaodan Xing, Shiyi Wang, Simon Walsh, Guang Yang

Since the onset of the COVID-19 pandemic in 2019, there has been a concerted effort to develop cost-effective, non-invasive, and rapid AI-based tools.

Machine-Learned Atomic Cluster Expansion Potentials for Fast and Quantum-Accurate Thermal Simulations of Wurtzite AlN

no code implementations20 Nov 2023 Guang Yang, Yuan-Bin Liu, Lei Yang, Bing-Yang Cao

Using the atomic cluster expansion (ACE) framework, we develop a machine learning interatomic potential for fast and accurately modelling the phonon transport properties of wurtzite aluminum nitride.

Where to Begin? From Random to Foundation Model Instructed Initialization in Federated Learning for Medical Image Segmentation

no code implementations27 Nov 2023 Ming Li, Guang Yang

In medical image analysis, Federated Learning (FL) stands out as a key technology that enables privacy-preserved, decentralized data processing, crucial for handling sensitive medical data.

Federated Learning Image Segmentation +2

Data and Physics driven Deep Learning Models for Fast MRI Reconstruction: Fundamentals and Methodologies

no code implementations29 Jan 2024 Jiahao Huang, Yinzhe Wu, Fanwen Wang, Yingying Fang, Yang Nan, Cagan Alkan, Lei Xu, Zhifan Gao, Weiwen Wu, Lei Zhu, Zhaolin Chen, Peter Lally, Neal Bangerter, Kawin Setsompop, Yike Guo, Daniel Rueckert, Ge Wang, Guang Yang

Magnetic Resonance Imaging (MRI) is a pivotal clinical diagnostic tool, yet its extended scanning times often compromise patient comfort and image quality, especially in volumetric, temporal and quantitative scans.

Federated Learning MRI Reconstruction

Assessing the Efficacy of Invisible Watermarks in AI-Generated Medical Images

no code implementations5 Feb 2024 Xiaodan Xing, Huiyu Zhou, Yingying Fang, Guang Yang

AI-generated medical images are gaining growing popularity due to their potential to address the data scarcity challenge in the real world.

HAMLET: Graph Transformer Neural Operator for Partial Differential Equations

no code implementations5 Feb 2024 Andrey Bryutkin, Jiahao Huang, Zhongying Deng, Guang Yang, Carola-Bibiane Schönlieb, Angelica Aviles-Rivero

We present a novel graph transformer framework, HAMLET, designed to address the challenges in solving partial differential equations (PDEs) using neural networks.

Make it more specific: A novel uncertainty based airway segmentation application on 3D U-Net and its variants

no code implementations12 Feb 2024 Shiyi Wang, Yang Nan, Felder Federico N, Sheng Zhang, Walsh Simon L F, Guang Yang

The most popular algorithms in medical segmentation, 3D U-Net and its variants, can directly implement the task of lung trachea segmentation, but its failure to consider the special tree-like structure of the trachea suggests that there is much room for improvement in its segmentation accuracy.

Segmentation

ContrastDiagnosis: Enhancing Interpretability in Lung Nodule Diagnosis Using Contrastive Learning

no code implementations8 Mar 2024 Chenglong Wang, Yinqiao Yi, Yida Wang, Chengxiu Zhang, Yun Liu, Kensaku MORI, Mei Yuan, Guang Yang

This framework is designed to introduce inherent transparency and provide extensive post-hoc explainability for deep learning model, making them more suitable for clinical medical diagnosis.

Contrastive Learning Medical Diagnosis

Co-Optimization of Environment and Policies for Decentralized Multi-Agent Navigation

no code implementations21 Mar 2024 Zhan Gao, Guang Yang, Amanda Prorok

By introducing two sub-objectives of multi-agent navigation and environment optimization, we propose an $\textit{agent-environment co-optimization}$ problem and develop a $\textit{coordinated algorithm}$ that alternates between these sub-objectives to search for an optimal synthesis of agent actions and obstacle configurations in the environment; ultimately, improving the navigation performance.

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