1 code implementation • 12 Aug 2024 • Matan Atad, Gabriel Gruber, Marx Ribeiro, Luis Fernando Nicolini, Robert Graf, Hendrik Möller, Kati Nispel, Ivan Ezhov, Daniel Rueckert, Jan S. Kirschke
The proposed method is evaluated against SOTA Genetic Algorithm and inverse model baselines on synthetic and in vitro experimental datasets.
1 code implementation • 26 Feb 2024 • Hendrik Möller, Robert Graf, Joachim Schmitt, Benjamin Keinert, Matan Atad, Anjany Sekuboyina, Felix Streckenbach, Hanna Schön, Florian Kofler, Thomas Kroencke, Stefanie Bette, Stefan Willich, Thomas Keil, Thoralf Niendorf, Tobias Pischon, Beate Endemann, Bjoern Menze, Daniel Rueckert, Jan S. Kirschke
Training on auto-generated annotations and evaluating on manually corrected test data from the GNC yielded global dice scores of 0. 900 for vertebrae, 0. 960 for intervertebral discs, and 0. 947 for the spinal canal.
1 code implementation • 5 Dec 2023 • Florian Kofler, Hendrik Möller, Josef A. Buchner, Ezequiel de la Rosa, Ivan Ezhov, Marcel Rosier, Isra Mekki, Suprosanna Shit, Moritz Negwer, Rami Al-Maskari, Ali Ertürk, Shankeeth Vinayahalingam, Fabian Isensee, Sarthak Pati, Daniel Rueckert, Jan S. Kirschke, Stefan K. Ehrlich, Annika Reinke, Bjoern Menze, Benedikt Wiestler, Marie Piraud
This paper introduces panoptica, a versatile and performance-optimized package designed for computing instance-wise segmentation quality metrics from 2D and 3D segmentation maps.