no code implementations • 12 Nov 2024 • Jesse He, Helen Jenne, Herman Chau, Davis Brown, Mark Raugas, Sara Billey, Henry Kvinge
In this work, we use graph neural networks to investigate quiver mutation -- an operation that transforms one quiver (or directed multigraph) into another -- which is central to the theory of cluster algebras with deep connections to geometry, topology, and physics.
no code implementations • 8 Sep 2024 • Guillermo Bernárdez, Lev Telyatnikov, Marco Montagna, Federica Baccini, Mathilde Papillon, Miquel Ferriol-Galmés, Mustafa Hajij, Theodore Papamarkou, Maria Sofia Bucarelli, Olga Zaghen, Johan Mathe, Audun Myers, Scott Mahan, Hansen Lillemark, Sharvaree Vadgama, Erik Bekkers, Tim Doster, Tegan Emerson, Henry Kvinge, Katrina Agate, Nesreen K Ahmed, Pengfei Bai, Michael Banf, Claudio Battiloro, Maxim Beketov, Paul Bogdan, Martin Carrasco, Andrea Cavallo, Yun Young Choi, George Dasoulas, Matouš Elphick, Giordan Escalona, Dominik Filipiak, Halley Fritze, Thomas Gebhart, Manel Gil-Sorribes, Salvish Goomanee, Victor Guallar, Liliya Imasheva, Andrei Irimia, Hongwei Jin, Graham Johnson, Nikos Kanakaris, Boshko Koloski, Veljko Kovač, Manuel Lecha, Minho Lee, Pierrick Leroy, Theodore Long, German Magai, Alvaro Martinez, Marissa Masden, Sebastian Mežnar, Bertran Miquel-Oliver, Alexis Molina, Alexander Nikitin, Marco Nurisso, Matt Piekenbrock, Yu Qin, Patryk Rygiel, Alessandro Salatiello, Max Schattauer, Pavel Snopov, Julian Suk, Valentina Sánchez, Mauricio Tec, Francesco Vaccarino, Jonas Verhellen, Frederic Wantiez, Alexander Weers, Patrik Zajec, Blaž Škrlj, Nina Miolane
This paper describes the 2nd edition of the ICML Topological Deep Learning Challenge that was hosted within the ICML 2024 ELLIS Workshop on Geometry-grounded Representation Learning and Generative Modeling (GRaM).
no code implementations • 22 Jul 2024 • Davis Brown, Cody Nizinski, Madelyn Shapiro, Corey Fallon, Tianzhixi Yin, Henry Kvinge, Jonathan H. Tu
Deep learning still struggles with certain kinds of scientific data.
no code implementations • 8 Jun 2024 • Sai Munikoti, Ian Stewart, Sameera Horawalavithana, Henry Kvinge, Tegan Emerson, Sandra E Thompson, Karl Pazdernik
Multimodal models are expected to be a critical component to future advances in artificial intelligence.
1 code implementation • 6 Dec 2023 • Cody Tipton, Elizabeth Coda, Davis Brown, Alyson Bittner, Jung Lee, Grayson Jorgenson, Tegan Emerson, Henry Kvinge
Characteristic classes, which are abstract topological invariants associated with vector bundles, have become an important notion in modern physics with surprising real-world consequences.
no code implementations • 23 Oct 2023 • Davis Brown, Charles Godfrey, Nicholas Konz, Jonathan Tu, Henry Kvinge
As language models are applied to an increasing number of real-world applications, understanding their inner workings has become an important issue in model trust, interpretability, and transparency.
no code implementations • 4 Oct 2023 • Nicholas Konz, Charles Godfrey, Madelyn Shapiro, Jonathan Tu, Henry Kvinge, Davis Brown
By now there is substantial evidence that deep learning models learn certain human-interpretable features as part of their internal representations of data.
1 code implementation • 26 Sep 2023 • Mathilde Papillon, Mustafa Hajij, Helen Jenne, Johan Mathe, Audun Myers, Theodore Papamarkou, Tolga Birdal, Tamal Dey, Tim Doster, Tegan Emerson, Gurusankar Gopalakrishnan, Devendra Govil, Aldo Guzmán-Sáenz, Henry Kvinge, Neal Livesay, Soham Mukherjee, Shreyas N. Samaga, Karthikeyan Natesan Ramamurthy, Maneel Reddy Karri, Paul Rosen, Sophia Sanborn, Robin Walters, Jens Agerberg, Sadrodin Barikbin, Claudio Battiloro, Gleb Bazhenov, Guillermo Bernardez, Aiden Brent, Sergio Escalera, Simone Fiorellino, Dmitrii Gavrilev, Mohammed Hassanin, Paul Häusner, Odin Hoff Gardaa, Abdelwahed Khamis, Manuel Lecha, German Magai, Tatiana Malygina, Rubén Ballester, Kalyan Nadimpalli, Alexander Nikitin, Abraham Rabinowitz, Alessandro Salatiello, Simone Scardapane, Luca Scofano, Suraj Singh, Jens Sjölund, Pavel Snopov, Indro Spinelli, Lev Telyatnikov, Lucia Testa, Maosheng Yang, Yixiao Yue, Olga Zaghen, Ali Zia, Nina Miolane
This paper presents the computational challenge on topological deep learning that was hosted within the ICML 2023 Workshop on Topology and Geometry in Machine Learning.
1 code implementation • 3 Jul 2023 • Sameera Horawalavithana, Sai Munikoti, Ian Stewart, Henry Kvinge
Instruction finetuning is a popular paradigm to align large language models (LLM) with human intent.
no code implementations • 22 May 2023 • Cuong Ly, Grayson Jorgenson, Dan Rosa de Jesus, Henry Kvinge, Adam Attarian, Yijing Watkins
In this work, we present a novel augmentation method, called collage pasting, for increasing the object density without a need for segmentation masks, thereby improving the detector performance.
no code implementations • 24 Mar 2023 • Charles Godfrey, Henry Kvinge, Elise Bishoff, Myles Mckay, Davis Brown, Tim Doster, Eleanor Byler
Past work exploring adversarial vulnerability have focused on situations where an adversary can perturb all dimensions of model input.
no code implementations • 10 Mar 2023 • Charles Godfrey, Michael G. Rawson, Davis Brown, Henry Kvinge
The space of permutation equivariant linear layers is a generalization of the partition algebra, an object first discovered in statistical physics with deep connections to the representation theory of the symmetric group, and the basis described above generalizes the so-called orbit basis of the partition algebra.
no code implementations • 28 Feb 2023 • Davis Brown, Charles Godfrey, Cody Nizinski, Jonathan Tu, Henry Kvinge
The current trend toward ever-larger models makes standard retraining procedures an ever-more expensive burden.
no code implementations • 16 Feb 2023 • Henry Kvinge, Davis Brown, Charles Godfrey
We find that choice of prompt has a substantial impact on the intrinsic dimension of representations at both layers of the model which we explored, but that the nature of this impact depends on the layer being considered.
no code implementations • 13 Jan 2023 • Scott Howland, Lara Kassab, Keerti Kappagantula, Henry Kvinge, Tegan Emerson
By characterizing microstructure from a topological perspective we are able to evaluate our models' ability to capture the breadth and diversity of experimental scanning electron microscope (SEM) samples.
no code implementations • 19 Nov 2022 • Henry Kvinge, Grayson Jorgenson, Davis Brown, Charles Godfrey, Tegan Emerson
While the last five years have seen considerable progress in understanding the internal representations of deep learning models, many questions remain.
no code implementations • 14 Nov 2022 • Sarah McGuire, Shane Jackson, Tegan Emerson, Henry Kvinge
While this field, sometimes known as topological machine learning (TML), has seen some notable successes, an understanding of how the process of learning from topological features differs from the process of learning from raw data is still limited.
no code implementations • 7 Oct 2022 • Henry Kvinge, Tegan H. Emerson, Grayson Jorgenson, Scott Vasquez, Timothy Doster, Jesse D. Lew
It is often said that a deep learning model is "invariant" to some specific type of transformation.
1 code implementation • 3 Oct 2022 • Charles Godfrey, Elise Bishoff, Myles Mckay, Davis Brown, Grayson Jorgenson, Henry Kvinge, Eleanor Byler
It is widely acknowledged that trained convolutional neural networks (CNNs) have different levels of sensitivity to signals of different frequency.
2 code implementations • 27 May 2022 • Charles Godfrey, Davis Brown, Tegan Emerson, Henry Kvinge
In this paper we seek to connect the symmetries arising from the architecture of a family of models with the symmetries of that family's internal representation of data.
no code implementations • 1 Apr 2022 • Lara Kassab, Scott Howland, Henry Kvinge, Keerti Sahithi Kappagantula, Tegan Emerson
Technological advances are in part enabled by the development of novel manufacturing processes that give rise to new materials or material property improvements.
no code implementations • 15 Mar 2022 • Elizabeth Coda, Nico Courts, Colby Wight, Loc Truong, Woongjo Choi, Charles Godfrey, Tegan Emerson, Keerti Kappagantula, Henry Kvinge
That is, a single input can potentially yield many different outputs (whether due to noise, imperfect measurement, or intrinsic stochasticity in the process) and many different inputs can yield the same output (that is, the map is not injective).
no code implementations • 3 Dec 2021 • Loc Truong, Woongjo Choi, Colby Wight, Lizzy Coda, Tegan Emerson, Keerti Kappagantula, Henry Kvinge
We show that by focusing on the experimenter's need to choose between multiple candidate experimental parameters, we can reframe the challenging regression task of predicting material properties from processing parameters, into a classification task on which machine learning models can achieve good performance.
no code implementations • 14 Oct 2021 • Davis Brown, Henry Kvinge
Methods for model explainability have become increasingly critical for testing the fairness and soundness of deep learning.
1 code implementation • ICLR 2022 • Nico Courts, Henry Kvinge
Many-to-one maps are ubiquitous in machine learning, from the image recognition model that assigns a multitude of distinct images to the concept of "cat" to the time series forecasting model which assigns a range of distinct time-series to a single scalar regression value.
no code implementations • 9 Jul 2021 • Henry Kvinge, Colby Wight, Sarah Akers, Scott Howland, Woongjo Choi, Xiaolong Ma, Luke Gosink, Elizabeth Jurrus, Keerti Kappagantula, Tegan H. Emerson
As both machine learning models and the datasets on which they are evaluated have grown in size and complexity, the practice of using a few summary statistics to understand model performance has become increasingly problematic.
no code implementations • 7 Jun 2021 • Scott Mahan, Henry Kvinge, Tim Doster
Building invariance to non-meaningful transformations is essential to building efficient and generalizable machine learning models.
no code implementations • 2 Jun 2021 • Henry Kvinge, Scott Howland, Nico Courts, Lauren A. Phillips, John Buckheit, Zachary New, Elliott Skomski, Jung H. Lee, Sandeep Tiwari, Jessica Hibler, Courtney D. Corley, Nathan O. Hodas
We describe how this problem is subtly different from out-of-distribution detection and describe a new method of identifying OOS examples within the Prototypical Networks framework using a fixed point which we call the generic representation.
no code implementations • 21 May 2021 • Henry Kvinge, Brett Jefferson, Cliff Joslyn, Emilie Purvine
As data grows in size and complexity, finding frameworks which aid in interpretation and analysis has become critical.
no code implementations • 8 Apr 2021 • Elliott Skomski, Aaron Tuor, Andrew Avila, Lauren Phillips, Zachary New, Henry Kvinge, Courtney D. Corley, Nathan Hodas
Recently proposed few-shot image classification methods have generally focused on use cases where the objects to be classified are the central subject of images.
no code implementations • 6 Oct 2020 • Song Feng, Emily Heath, Brett Jefferson, Cliff Joslyn, Henry Kvinge, Hugh D. Mitchell, Brenda Praggastis, Amie J. Eisfeld, Amy C. Sims, Larissa B. Thackray, Shufang Fan, Kevin B. Walters, Peter J. Halfmann, Danielle Westhoff-Smith, Qing Tan, Vineet D. Menachery, Timothy P. Sheahan, Adam S. Cockrell, Jacob F. Kocher, Kelly G. Stratton, Natalie C. Heller, Lisa M. Bramer, Michael S. Diamond, Ralph S. Baric, Katrina M. Waters, Yoshihiro Kawaoka, Jason E. McDermott, Emilie Purvine
Results: We compiled a novel data set of transcriptional host response to pathogenic viral infections and formulated relationships between genes as a hypergraph where hyperedges represent significantly perturbed genes, and vertices represent individual biological samples with specific experimental conditions.
no code implementations • 23 Sep 2020 • Henry Kvinge, Zachary New, Nico Courts, Jung H. Lee, Lauren A. Phillips, Courtney D. Corley, Aaron Tuor, Andrew Avila, Nathan O. Hodas
Few-shot learning algorithms, which seek to address this limitation, are designed to generalize well to new tasks with limited data.
no code implementations • 27 Jun 2019 • Henry Kvinge, Elin Farnell, Julia R. Dupuis, Michael Kirby, Chris Peterson, Elizabeth C. Schundler
In this paper we explore a phenomenon in which bandwise CS sampling of a hyperspectral data cube followed by reconstruction can actually result in amplification of chemical signals contained in the cube.
no code implementations • 20 Jun 2019 • Elin Farnell, Henry Kvinge, John P. Dixon, Julia R. Dupuis, Michael Kirby, Chris Peterson, Elizabeth C. Schundler, Christian W. Smith
We propose a method for defining an order for a sampling basis that is optimal with respect to capturing variance in data, thus allowing for meaningful sensing at any desired level of compression.
no code implementations • 29 Jan 2019 • Henry Kvinge, Elin Farnell, Jingya Li, Yujia Chen
The first is a general lack of labeled examples of the rare class and the second is the potential non-separability of the rare class from the majority (in terms of available features).
no code implementations • 8 Dec 2018 • Mark Blumstein, Henry Kvinge
Leveraging the intrinsic symmetries in data for clear and efficient analysis is an important theme in signal processing and other data-driven sciences.
no code implementations • 27 Oct 2018 • Henry Kvinge, Elin Farnell, Michael Kirby, Chris Peterson
In this paper, we propose a new statistic that we call the $\kappa$-profile for analysis of large data sets.
no code implementations • 5 Aug 2018 • Henry Kvinge, Elin Farnell, Michael Kirby, Chris Peterson
Intuitively, the SAP algorithm seeks to determine a projection which best preserves the lengths of all secants between points in a data set; by applying the algorithm to find the best projections to vector spaces of various dimensions, one may infer the dimension of the manifold of origination.
no code implementations • 10 Jul 2018 • Henry Kvinge, Elin Farnell, Michael Kirby, Chris Peterson
Dimensionality-reduction techniques are a fundamental tool for extracting useful information from high-dimensional data sets.
no code implementations • 3 Jul 2018 • Elin Farnell, Henry Kvinge, Michael Kirby, Chris Peterson
Endmember extraction plays a prominent role in a variety of data analysis problems as endmembers often correspond to data representing the purest or best representative of some feature.