Search Results for author: Hernán A. Makse

Found 5 papers, 3 papers with code

Fibration symmetry uncovers minimal regulatory networks for logical computation in bacteria

no code implementations17 Oct 2023 Luis A. Álvarez-García, Wolfram Liebermeister, Ian Leifer, Hernán A. Makse

Symmetry principles have proven important in physics, deep learning and geometry, allowing for the reduction of complicated systems to simpler, more comprehensible models that preserve the system's features of interest.

Decision Making

Fibration symmetries and cluster synchronization in the Caenorhabditis elegans connectome

1 code implementation30 May 2023 Bryant Avila, Pedro Augusto, Manuel Zimmer, Matteo Serafino, Hernán A. Makse

Capturing how the Caenorhabditis elegans connectome structure gives rise to its neuron functionality remains unclear.

Symmetry-driven network reconstruction through pseudobalanced coloring optimization

no code implementations15 Nov 2021 Ian Leifer, David Phillips, Francesco Sorrentino, Hernán A. Makse

For that reason, a method to find pseudosymmetries and repair networks based on those symmetries is important when analyzing real world networks.

Link Prediction

Quasifibrations of Graphs to Find Symmetries in Biological Networks

1 code implementation13 Nov 2021 Paolo Boldi, Ian Leifer, Hernán A. Makse

A fibration of graphs is an homomorphism that is a local isomorphism of in-neighbourhoods, much in the same way a covering projection is a local isomorphism of neighbourhoods.

Predicting synchronized gene coexpression patterns from fibration symmetries in gene regulatory networks in bacteria

1 code implementation16 Apr 2021 Ian Leifer, Mishael Sánchez-Pérez, Cecilia Ishida, Hernán A. Makse

We have recently shown that synchronized gene expression may be predicted from symmetries in the gene regulatory networks (GRN) and described by the concept of symmetry fibrations.

Cannot find the paper you are looking for? You can Submit a new open access paper.