1 code implementation • 5 Feb 2024 • José Morano, Guilherme Aresta, Hrvoje Bogunović
The framework consists of a fully convolutional neural network that recursively refines semantic segmentation maps, correcting manifest classification errors and thus improving topological consistency.
Ranked #1 on Classification on LES-AV
1 code implementation • 30 Jun 2022 • Taha Emre, Arunava Chakravarty, Antoine Rivail, Sophie Riedl, Ursula Schmidt-Erfurth, Hrvoje Bogunović
Recent contrastive learning methods achieved state-of-the-art in low label regimes.
1 code implementation • 3 Feb 2023 • Coen de Vente, Koenraad A. Vermeer, Nicolas Jaccard, He Wang, Hongyi Sun, Firas Khader, Daniel Truhn, Temirgali Aimyshev, Yerkebulan Zhanibekuly, Tien-Dung Le, Adrian Galdran, Miguel Ángel González Ballester, Gustavo Carneiro, Devika R G, Hrishikesh P S, Densen Puthussery, Hong Liu, Zekang Yang, Satoshi Kondo, Satoshi Kasai, Edward Wang, Ashritha Durvasula, Jónathan Heras, Miguel Ángel Zapata, Teresa Araújo, Guilherme Aresta, Hrvoje Bogunović, Mustafa Arikan, Yeong Chan Lee, Hyun Bin Cho, Yoon Ho Choi, Abdul Qayyum, Imran Razzak, Bram van Ginneken, Hans G. Lemij, Clara I. Sánchez
Artificial intelligence (AI) can be used to analyze color fundus photographs (CFPs) in a cost-effective manner, making glaucoma screening more accessible.
1 code implementation • 13 May 2023 • Huihui Fang, Fei Li, Junde Wu, Huazhu Fu, Xu sun, José Ignacio Orlando, Hrvoje Bogunović, Xiulan Zhang, Yanwu Xu
Our databases comprises 1200 images with associated labels for the pathologic myopia category and manual annotations of the optic disc, the position of the fovea and delineations of lesions such as patchy retinal atrophy (including peripapillary atrophy) and retinal detachment.
1 code implementation • 6 Jul 2023 • José Morano, Guilherme Aresta, Dmitrii Lachinov, Julia Mai, Ursula Schmidt-Erfurth, Hrvoje Bogunović
Moreover, the proposed SSL method allows further improvement of this performance by up to 23%, and we show that the SSL is beneficial regardless of the network architecture.
no code implementations • 23 Jan 2019 • José Ignacio Orlando, Philipp Seeböck, Hrvoje Bogunović, Sophie Klimscha, Christoph Grechenig, Sebastian Waldstein, Bianca S. Gerendas, Ursula Schmidt-Erfurth
In this paper, we introduce a Bayesian deep learning based model for segmenting the photoreceptor layer in pathological OCT scans.
Ranked #4 on Image Matting on AIM-500
no code implementations • 24 Jan 2019 • Philipp Seeböck, David Romo-Bucheli, Sebastian Waldstein, Hrvoje Bogunović, José Ignacio Orlando, Bianca S. Gerendas, Georg Langs, Ursula Schmidt-Erfurth
Among the several sources of variability the ML models have to deal with, a major factor is the acquisition device, which can limit the ML model's generalizability.
no code implementations • 29 May 2019 • Philipp Seeböck, José Ignacio Orlando, Thomas Schlegl, Sebastian M. Waldstein, Hrvoje Bogunović, Sophie Klimscha, Georg Langs, Ursula Schmidt-Erfurth
We propose to take advantage of this property using bayesian deep learning, based on the assumption that epistemic uncertainties will correlate with anatomical deviations from a normal training set.
no code implementations • 18 Jun 2019 • Rhona Asgari, José Ignacio Orlando, Sebastian Waldstein, Ferdinand Schlanitz, Magdalena Baratsits, Ursula Schmidt-Erfurth, Hrvoje Bogunović
We also introduce connections between each class-specific branch and the additional decoder to increase the regularization effect of this surrogate task.
no code implementations • 2 Aug 2019 • José Ignacio Orlando, Anna Breger, Hrvoje Bogunović, Sophie Riedl, Bianca S. Gerendas, Martin Ehler, Ursula Schmidt-Erfurth
Supervised deep learning models trained with standard loss functions are usually able to characterize only the most common disease appeareance from a training set, resulting in suboptimal performance and poor generalization when dealing with unseen lesions.
no code implementations • 8 Oct 2019 • José Ignacio Orlando, Huazhu Fu, João Barbossa Breda, Karel van Keer, Deepti. R. Bathula, Andrés Diaz-Pinto, Ruogu Fang, Pheng-Ann Heng, Jeyoung Kim, Joonho Lee, Joonseok Lee, Xiaoxiao Li, Peng Liu, Shuai Lu, Balamurali Murugesan, Valery Naranjo, Sai Samarth R. Phaye, Sharath M. Shankaranarayana, Apoorva Sikka, Jaemin Son, Anton Van Den Hengel, Shujun Wang, Junyan Wu, Zifeng Wu, Guanghui Xu, Yongli Xu, Pengshuai Yin, Fei Li, Yanwu Xu, Xiulan Zhang, Hrvoje Bogunović
As part of REFUGE, we have publicly released a data set of 1200 fundus images with ground truth segmentations and clinical glaucoma labels, currently the largest existing one.
no code implementations • 21 Oct 2019 • Antoine Rivail, Ursula Schmidt-Erfurth, Wolf-Dieter Vogl, Sebastian M. Waldstein, Sophie Riedl, Christoph Grechenig, Zhichao Wu, Hrvoje Bogunović
Longitudinal imaging is capable of capturing the static ana\-to\-mi\-cal structures and the dynamic changes of the morphology resulting from aging or disease progression.
no code implementations • 11 Dec 2019 • Rhona Asgari, Sebastian Waldstein, Ferdinand Schlanitz, Magdalena Baratsits, Ursula Schmidt-Erfurth, Hrvoje Bogunović
In the second approach, the surrounding retinal layers (outer boundary retinal pigment epithelium (OBRPE) and Bruch's membrane (BM)) are segmented and the remaining space between these two layers is extracted as drusen.
no code implementations • 16 Feb 2022 • Huihui Fang, Fei Li, Huazhu Fu, Xu sun, Xingxing Cao, Fengbin Lin, Jaemin Son, Sunho Kim, Gwenole Quellec, Sarah Matta, Sharath M Shankaranarayana, Yi-Ting Chen, Chuen-heng Wang, Nisarg A. Shah, Chia-Yen Lee, Chih-Chung Hsu, Hai Xie, Baiying Lei, Ujjwal Baid, Shubham Innani, Kang Dang, Wenxiu Shi, Ravi Kamble, Nitin Singhal, Ching-Wei Wang, Shih-Chang Lo, José Ignacio Orlando, Hrvoje Bogunović, Xiulan Zhang, Yanwu Xu, iChallenge-AMD study group
The ADAM challenge consisted of four tasks which cover the main aspects of detecting and characterizing AMD from fundus images, including detection of AMD, detection and segmentation of optic disc, localization of fovea, and detection and segmentation of lesions.
no code implementations • 18 Feb 2022 • Huihui Fang, Fei Li, Junde Wu, Huazhu Fu, Xu sun, Jaemin Son, Shuang Yu, Menglu Zhang, Chenglang Yuan, Cheng Bian, Baiying Lei, Benjian Zhao, Xinxing Xu, Shaohua Li, Francisco Fumero, José Sigut, Haidar Almubarak, Yakoub Bazi, Yuanhao Guo, Yating Zhou, Ujjwal Baid, Shubham Innani, Tianjiao Guo, Jie Yang, José Ignacio Orlando, Hrvoje Bogunović, Xiulan Zhang, Yanwu Xu
Here we release a multi-annotation, multi-quality, and multi-device color fundus image dataset for glaucoma analysis on an original challenge -- Retinal Fundus Glaucoma Challenge 2nd Edition (REFUGE2).
no code implementations • 4 Aug 2022 • Robbie Holland, Oliver Leingang, Hrvoje Bogunović, Sophie Riedl, Lars Fritsche, Toby Prevost, Hendrik P. N. Scholl, Ursula Schmidt-Erfurth, Sobha Sivaprasad, Andrew J. Lotery, Daniel Rueckert, Martin J. Menten
This is exacerbated in longitudinal image datasets that repeatedly image the same patient cohort to monitor their disease progression over time.
no code implementations • 11 Jan 2023 • Robbie Holland, Oliver Leingang, Christopher Holmes, Philipp Anders, Rebecca Kaye, Sophie Riedl, Johannes C. Paetzold, Ivan Ezhov, Hrvoje Bogunović, Ursula Schmidt-Erfurth, Lars Fritsche, Hendrik P. N. Scholl, Sobha Sivaprasad, Andrew J. Lotery, Daniel Rueckert, Martin J. Menten
Age-related macular degeneration (AMD) is the leading cause of blindness in the elderly.
no code implementations • 17 Apr 2023 • Arunava Chakravarty, Taha Emre, Oliver Leingang, Sophie Riedl, Julia Mai, Hendrik P. N. Scholl, Sobha Sivaprasad, Daniel Rueckert, Andrew Lotery, Ursula Schmidt-Erfurth, Hrvoje Bogunović
We develop a Deep Learning (DL) model to predict the future risk of conversion of an eye from iAMD to nAMD from its current OCT scan.
no code implementations • 25 Jul 2023 • Taha Emre, Marzieh Oghbaie, Arunava Chakravarty, Antoine Rivail, Sophie Riedl, Julia Mai, Hendrik P. N. Scholl, Sobha Sivaprasad, Daniel Rueckert, Andrew Lotery, Ursula Schmidt-Erfurth, Hrvoje Bogunović
In the field of medical imaging, 3D deep learning models play a crucial role in building powerful predictive models of disease progression.
no code implementations • 18 Aug 2023 • Botond Fazekas, José Morano, Dmitrii Lachinov, Guilherme Aresta, Hrvoje Bogunović
The Segment Anything Model (SAM) has gained significant attention in the field of image segmentation due to its impressive capabilities and prompt-based interface.
no code implementations • 28 Dec 2023 • Taha Emre, Arunava Chakravarty, Antoine Rivail, Dmitrii Lachinov, Oliver Leingang, Sophie Riedl, Julia Mai, Hendrik P. N. Scholl, Sobha Sivaprasad, Daniel Rueckert, Andrew Lotery, Ursula Schmidt-Erfurth, Hrvoje Bogunović
Self-supervised learning (SSL) has emerged as a powerful technique for improving the efficiency and effectiveness of deep learning models.
1 code implementation • 2 Feb 2024 • José Morano, Guilherme Aresta, Christoph Grechenig, Ursula Schmidt-Erfurth, Hrvoje Bogunović
The use of multimodal imaging has led to significant improvements in the diagnosis and treatment of many diseases.
no code implementations • 12 Mar 2024 • Chengzhi Shen, Martin J. Menten, Hrvoje Bogunović, Ursula Schmidt-Erfurth, Hendrik Scholl, Sobha Sivaprasad, Andrew Lotery, Daniel Rueckert, Paul Hager, Robbie Holland
Moreover, tracking longer term developments that occur over months or years in evolving processes, such as age-related macular degeneration (AMD), is essential for accurate prognosis.