no code implementations • 25 Apr 2025 • Yui Lo, Yuqian Chen, Dongnan Liu, Leo Zekelman, Jarrett Rushmore, Yogesh Rathi, Nikos Makris, Alexandra J. Golby, Fan Zhang, Weidong Cai, Lauren J. O'Donnell
We propose Tract2Shape, a novel multimodal deep learning framework that leverages geometric (point cloud) and scalar (tabular) features to predict ten white matter tractography shape measures.
1 code implementation • 10 Mar 2025 • Haolin He, Ce Zhu, Le Zhang, Yipeng Liu, Xiao Xu, Yuqian Chen, Leo Zekelman, Jarrett Rushmore, Yogesh Rathi, Nikos Makris, Lauren J. O'Donnell, Fan Zhang
Diffusion MRI tractography is an advanced imaging technique that can estimate the brain's white matter structural connectivity to potentially reveal the topography of the nuclei of interest for studying its subdivisions.
no code implementations • 4 Nov 2024 • Jin Wang, Bocheng Guo, Yijie Li, Junyi Wang, Yuqian Chen, Jarrett Rushmore, Nikos Makris, Yogesh Rathi, Lauren J O'Donnell, Fan Zhang
Tractography fiber clustering using diffusion MRI (dMRI) is a crucial strategy for white matter (WM) parcellation.
1 code implementation • 29 Oct 2024 • Yui Lo, Yuqian Chen, Dongnan Liu, Jon Haitz Legarreta, Leo Zekelman, Fan Zhang, Jarrett Rushmore, Yogesh Rathi, Nikos Makris, Alexandra J. Golby, Weidong Cai, Lauren J. O'Donnell
In this work, we investigate the possibility of utilizing a deep learning model to compute shape measures of the brain's white matter connections.
no code implementations • 19 Oct 2024 • Yui Lo, Yuqian Chen, Dongnan Liu, Wan Liu, Leo Zekelman, Jarrett Rushmore, Fan Zhang, Yogesh Rathi, Nikos Makris, Alexandra J. Golby, Weidong Cai, Lauren J. O'Donnell
Our results demonstrate that shape measures are predictive of individual cognitive performance.
no code implementations • 21 Jul 2024 • Ari Tchetchenian, Leo Zekelman, Yuqian Chen, Jarrett Rushmore, Fan Zhang, Edward H. Yeterian, Nikos Makris, Yogesh Rathi, Erik Meijering, Yang song, Lauren J. O'Donnell
We refer to our method as Deep Multimodal Saliency Parcellation (DeepMSP), as it computes the saliency of structural measures for predicting cognitive and motor functional performance, with these saliencies being applied to the task of parcellation.
no code implementations • 6 Apr 2024 • Yijie Li, Wei zhang, Ye Wu, Li Yin, Ce Zhu, Yuqian Chen, Suheyla Cetin-Karayumak, Kang Ik K Cho, Leo R. Zekelman, Jarrett Rushmore, Yogesh Rathi, Nikos Makris, Lauren J. O'Donnell, Fan Zhang
However, a comprehensive investigation into WM fiber tracts between Eastern and Western populations is challenged due to the lack of a cross-population WM atlas and the large site-specific variability of dMRI data.
no code implementations • 25 Nov 2023 • Haolin He, Ce Zhu, Le Zhang, Yipeng Liu, Xiao Xu, Yuqian Chen, Leo Zekelman, Jarrett Rushmore, Yogesh Rathi, Nikos Makris, Lauren J. O'Donnell, Fan Zhang
The amygdala plays a vital role in emotional processing and exhibits structural diversity that necessitates fine-scale parcellation for a comprehensive understanding of its anatomico-functional correlations.
no code implementations • 9 Jun 2023 • Jianzhong He, Fan Zhang, Yiang Pan, Yuanjing Feng, Jarrett Rushmore, Erickson Torio, Yogesh Rathi, Nikos Makris, Ron Kikinis, Alexandra J. Golby, Lauren J. O'Donnell
The corticospinal tract (CST) is a critically important white matter fiber tract in the human brain that enables control of voluntary movements of the body.