Provably Stable Feature Rankings with SHAP and LIME

1 code implementation • 28 Jan 2024 • Jeremy Goldwasser, Giles Hooker

Feature attributions are ubiquitous tools for understanding the predictions of machine learning models.

Computational Efficiency

Ascle: A Python Natural Language Processing Toolkit for Medical Text Generation

3 code implementations • 28 Nov 2023 • Rui Yang, Qingcheng Zeng, Keen You, Yujie Qiao, Lucas Huang, Chia-Chun Hsieh, Benjamin Rosand, Jeremy Goldwasser, Amisha D Dave, Tiarnan D. L. Keenan, Emily Y Chew, Dragomir Radev, Zhiyong Lu, Hua Xu, Qingyu Chen, Irene Li

This study introduces Ascle, a pioneering natural language processing (NLP) toolkit designed for medical text generation.

Machine Translation Question Answering +5

Stabilizing Estimates of Shapley Values with Control Variates

1 code implementation • 11 Oct 2023 • Jeremy Goldwasser, Giles Hooker

Shapley values are among the most popular tools for explaining predictions of blackbox machine learning models.

EHRKit: A Python Natural Language Processing Toolkit for Electronic Health Record Texts

no code implementations • 13 Apr 2022 • Irene Li, Keen You, Yujie Qiao, Lucas Huang, Chia-Chun Hsieh, Benjamin Rosand, Jeremy Goldwasser, Dragomir Radev

The Electronic Health Record (EHR) is an essential part of the modern medical system and impacts healthcare delivery, operations, and research.

Information Retrieval Machine Translation +5

Neural Natural Language Processing for Unstructured Data in Electronic Health Records: a Review

no code implementations • 7 Jul 2021 • Irene Li, Jessica Pan, Jeremy Goldwasser, Neha Verma, Wai Pan Wong, Muhammed Yavuz Nuzumlali, Benjamin Rosand, Yixin Li, Matthew Zhang, David Chang, R. Andrew Taylor, Harlan M. Krumholz, Dragomir Radev

Electronic health records (EHRs), digital collections of patient healthcare events and observations, are ubiquitous in medicine and critical to healthcare delivery, operations, and research.

Knowledge Graphs Question Answering +1

Forest Fire Clustering for Single-cell Sequencing with Iterative Label Propagation and Parallelized Monte Carlo Simulation

1 code implementation • 22 Mar 2021 • Zhanlin Chen, Jeremy Goldwasser, Philip Tuckman, Jason Liu, Jing Zhang, Mark Gerstein

Here, we introduce Forest Fire Clustering, an efficient and interpretable method for cell-type discovery from single-cell data.

Clustering