Search Results for author: Jiancheng Yang

Found 38 papers, 21 papers with code

DataCook: Crafting Anti-Adversarial Examples for Healthcare Data Copyright Protection

no code implementations26 Mar 2024 Sihan Shang, Jiancheng Yang, Zhenglong Sun, Pascal Fua

This paper introduces a novel approach, named DataCook, designed to safeguard the copyright of healthcare data during the deployment phase.

LeFusion: Synthesizing Myocardial Pathology on Cardiac MRI via Lesion-Focus Diffusion Models

no code implementations21 Mar 2024 Hantao Zhang, Jiancheng Yang, Shouhong Wan, Pascal Fua

By redesigning the diffusion learning objectives to concentrate on lesion areas, it simplifies the model learning process and enhance the controllability of the synthetic output, while preserving background by integrating forward-diffused background contexts into the reverse diffusion process.

Image Inpainting Lesion Segmentation

MedShapeNet -- A Large-Scale Dataset of 3D Medical Shapes for Computer Vision

1 code implementation30 Aug 2023 Jianning Li, Zongwei Zhou, Jiancheng Yang, Antonio Pepe, Christina Gsaxner, Gijs Luijten, Chongyu Qu, Tiezheng Zhang, Xiaoxi Chen, Wenxuan Li, Marek Wodzinski, Paul Friedrich, Kangxian Xie, Yuan Jin, Narmada Ambigapathy, Enrico Nasca, Naida Solak, Gian Marco Melito, Viet Duc Vu, Afaque R. Memon, Christopher Schlachta, Sandrine de Ribaupierre, Rajnikant Patel, Roy Eagleson, Xiaojun Chen, Heinrich Mächler, Jan Stefan Kirschke, Ezequiel de la Rosa, Patrick Ferdinand Christ, Hongwei Bran Li, David G. Ellis, Michele R. Aizenberg, Sergios Gatidis, Thomas Küstner, Nadya Shusharina, Nicholas Heller, Vincent Andrearczyk, Adrien Depeursinge, Mathieu Hatt, Anjany Sekuboyina, Maximilian Löffler, Hans Liebl, Reuben Dorent, Tom Vercauteren, Jonathan Shapey, Aaron Kujawa, Stefan Cornelissen, Patrick Langenhuizen, Achraf Ben-Hamadou, Ahmed Rekik, Sergi Pujades, Edmond Boyer, Federico Bolelli, Costantino Grana, Luca Lumetti, Hamidreza Salehi, Jun Ma, Yao Zhang, Ramtin Gharleghi, Susann Beier, Arcot Sowmya, Eduardo A. Garza-Villarreal, Thania Balducci, Diego Angeles-Valdez, Roberto Souza, Leticia Rittner, Richard Frayne, Yuanfeng Ji, Vincenzo Ferrari, Soumick Chatterjee, Florian Dubost, Stefanie Schreiber, Hendrik Mattern, Oliver Speck, Daniel Haehn, Christoph John, Andreas Nürnberger, João Pedrosa, Carlos Ferreira, Guilherme Aresta, António Cunha, Aurélio Campilho, Yannick Suter, Jose Garcia, Alain Lalande, Vicky Vandenbossche, Aline Van Oevelen, Kate Duquesne, Hamza Mekhzoum, Jef Vandemeulebroucke, Emmanuel Audenaert, Claudia Krebs, Timo Van Leeuwen, Evie Vereecke, Hauke Heidemeyer, Rainer Röhrig, Frank Hölzle, Vahid Badeli, Kathrin Krieger, Matthias Gunzer, Jianxu Chen, Timo van Meegdenburg, Amin Dada, Miriam Balzer, Jana Fragemann, Frederic Jonske, Moritz Rempe, Stanislav Malorodov, Fin H. Bahnsen, Constantin Seibold, Alexander Jaus, Zdravko Marinov, Paul F. Jaeger, Rainer Stiefelhagen, Ana Sofia Santos, Mariana Lindo, André Ferreira, Victor Alves, Michael Kamp, Amr Abourayya, Felix Nensa, Fabian Hörst, Alexander Brehmer, Lukas Heine, Yannik Hanusrichter, Martin Weßling, Marcel Dudda, Lars E. Podleska, Matthias A. Fink, Julius Keyl, Konstantinos Tserpes, Moon-Sung Kim, Shireen Elhabian, Hans Lamecker, Dženan Zukić, Beatriz Paniagua, Christian Wachinger, Martin Urschler, Luc Duong, Jakob Wasserthal, Peter F. Hoyer, Oliver Basu, Thomas Maal, Max J. H. Witjes, Gregor Schiele, Ti-chiun Chang, Seyed-Ahmad Ahmadi, Ping Luo, Bjoern Menze, Mauricio Reyes, Thomas M. Deserno, Christos Davatzikos, Behrus Puladi, Pascal Fua, Alan L. Yuille, Jens Kleesiek, Jan Egger

For the medical domain, we present a large collection of anatomical shapes (e. g., bones, organs, vessels) and 3D models of surgical instrument, called MedShapeNet, created to facilitate the translation of data-driven vision algorithms to medical applications and to adapt SOTA vision algorithms to medical problems.

Anatomy Mixed Reality

Scale-aware Test-time Click Adaptation for Pulmonary Nodule and Mass Segmentation

1 code implementation28 Jul 2023 Zhihao LI, Jiancheng Yang, Yongchao Xu, Li Zhang, Wenhui Dong, Bo Du

Extensive experiments on both open-source and in-house datasets consistently demonstrate the effectiveness of the proposed method over some CNN and Transformer-based segmentation methods.

Image Segmentation Management +4

Enforcing Topological Interaction between Implicit Surfaces via Uniform Sampling

no code implementations16 Jul 2023 Hieu Le, Nicolas Talabot, Jiancheng Yang, Pascal Fua

Further, we show that our proposed method can be used to simulate various ways a hand can interact with an arbitrary object.

3D Reconstruction Object

Topology Repairing of Disconnected Pulmonary Airways and Vessels: Baselines and a Dataset

1 code implementation12 Jun 2023 Ziqiao Weng, Jiancheng Yang, Dongnan Liu, Weidong Cai

To address this challenge, we propose a post-processing approach that leverages a data-driven method to repair the topology of disconnected pulmonary tubular structures.

Keypoint Detection

The Impact of ChatGPT and LLMs on Medical Imaging Stakeholders: Perspectives and Use Cases

no code implementations11 Jun 2023 Jiancheng Yang, Hongwei Bran Li, Donglai Wei

This study investigates the transformative potential of Large Language Models (LLMs), such as OpenAI ChatGPT, in medical imaging.

Decision Making

SGDA: Towards 3D Universal Pulmonary Nodule Detection via Slice Grouped Domain Attention

1 code implementation7 Mar 2023 Rui Xu, Zhi Liu, Yong Luo, Han Hu, Li Shen, Bo Du, Kaiming Kuang, Jiancheng Yang

To address this issue, we propose a slice grouped domain attention (SGDA) module to enhance the generalization capability of the pulmonary nodule detection networks.

Computed Tomography (CT)

RibSeg v2: A Large-scale Benchmark for Rib Labeling and Anatomical Centerline Extraction

1 code implementation18 Oct 2022 Liang Jin, Shixuan Gu, Donglai Wei, Jason Ken Adhinarta, Kaiming Kuang, Yongjie Jessica Zhang, Hanspeter Pfister, Bingbing Ni, Jiancheng Yang, Ming Li

Based on the RibSeg v2, we develop a pipeline including deep learning-based methods for rib labeling, and a skeletonization-based method for centerline extraction.

Computational Efficiency Segmentation

LSSANet: A Long Short Slice-Aware Network for Pulmonary Nodule Detection

1 code implementation3 Aug 2022 Rui Xu, Yong Luo, Bo Du, Kaiming Kuang, Jiancheng Yang

Convolutional neural networks (CNNs) have been demonstrated to be highly effective in the field of pulmonary nodule detection.

Computed Tomography (CT)

What Makes for Automatic Reconstruction of Pulmonary Segments

1 code implementation7 Jul 2022 Kaiming Kuang, Li Zhang, Jingyu Li, Hongwei Li, Jiajun Chen, Bo Du, Jiancheng Yang

The automatic reconstruction of pulmonary segments by ImPulSe is accurate in metrics and visually appealing.

3D Reconstruction

Neural Annotation Refinement: Development of a New 3D Dataset for Adrenal Gland Analysis

1 code implementation30 Jun 2022 Jiancheng Yang, Rui Shi, Udaranga Wickramasinghe, Qikui Zhu, Bingbing Ni, Pascal Fua

Besides, we develop a new Adrenal gLand ANalysis (ALAN) dataset with the proposed NeAR, where each case consists of a 3D shape of adrenal gland and its diagnosis label (normal vs. abnormal) assigned by experts.

Differentiable Projection from Optical Coherence Tomography B-Scan without Retinal Layer Segmentation Supervision

1 code implementation11 Jun 2022 Dingyi Rong, Jiancheng Yang, Bingbing Ni, Bilian Ke

Projection map (PM) from optical coherence tomography (OCT) B-scan is an important tool to diagnose retinal diseases, which typically requires retinal layer segmentation.

Segmentation

Representation-Agnostic Shape Fields

1 code implementation ICLR 2022 Xiaoyang Huang, Jiancheng Yang, Yanjun Wang, Ziyu Chen, Linguo Li, Teng Li, Bingbing Ni, Wenjun Zhang

In this study, we present Representation-Agnostic Shape Fields (RASF), a generalizable and computation-efficient shape embedding module for 3D deep learning.

ImplicitAtlas: Learning Deformable Shape Templates in Medical Imaging

no code implementations CVPR 2022 Jiancheng Yang, Udaranga Wickramasinghe, Bingbing Ni, Pascal Fua

Deep implicit shape models have become popular in the computer vision community at large but less so for biomedical applications.

MedMNIST v2 -- A large-scale lightweight benchmark for 2D and 3D biomedical image classification

3 code implementations27 Oct 2021 Jiancheng Yang, Rui Shi, Donglai Wei, Zequan Liu, Lin Zhao, Bilian Ke, Hanspeter Pfister, Bingbing Ni

We introduce MedMNIST v2, a large-scale MNIST-like dataset collection of standardized biomedical images, including 12 datasets for 2D and 6 datasets for 3D.

AutoML Image Classification

RibSeg Dataset and Strong Point Cloud Baselines for Rib Segmentation from CT Scans

1 code implementation17 Sep 2021 Jiancheng Yang, Shixuan Gu, Donglai Wei, Hanspeter Pfister, Bingbing Ni

Manual rib inspections in computed tomography (CT) scans are clinically critical but labor-intensive, as 24 ribs are typically elongated and oblique in 3D volumes.

Computed Tomography (CT) Segmentation

Asymmetric 3D Context Fusion for Universal Lesion Detection

1 code implementation17 Sep 2021 Jiancheng Yang, Yi He, Kaiming Kuang, Zudi Lin, Hanspeter Pfister, Bingbing Ni

The proposed A3D consistently outperforms symmetric context fusion operators by considerable margins, and establishes a new \emph{state of the art} on DeepLesion.

Computed Tomography (CT) Lesion Detection +1

3D Human Action Representation Learning via Cross-View Consistency Pursuit

1 code implementation CVPR 2021 Linguo Li, Minsi Wang, Bingbing Ni, Hang Wang, Jiancheng Yang, Wenjun Zhang

In this work, we propose a Cross-view Contrastive Learning framework for unsupervised 3D skeleton-based action Representation (CrosSCLR), by leveraging multi-view complementary supervision signal.

Action Recognition Contrastive Learning +1

Shape Self-Correction for Unsupervised Point Cloud Understanding

no code implementations ICCV 2021 Ye Chen, Jinxian Liu, Bingbing Ni, Hang Wang, Jiancheng Yang, Ning Liu, Teng Li, Qi Tian

Then the destroyed shape and the normal shape are sent into a point cloud network to get representations, which are employed to segment points that belong to distorted parts and further reconstruct them to restore the shape to normal.

Self-Supervised Learning

Learning Black-Box Attackers with Transferable Priors and Query Feedback

1 code implementation NeurIPS 2020 Jiancheng Yang, Yangzhou Jiang, Xiaoyang Huang, Bingbing Ni, Chenglong Zhao

This paper addresses the challenging black-box adversarial attack problem, where only classification confidence of a victim model is available.

Adversarial Attack

MIA-Prognosis: A Deep Learning Framework to Predict Therapy Response

1 code implementation8 Oct 2020 Jiancheng Yang, Jiajun Chen, Kaiming Kuang, Tiancheng Lin, Junjun He, Bingbing Ni

Furthermore, we experiment the proposed method on an in-house, retrospective dataset of real-world non-small cell lung cancer patients under anti-PD-1 immunotherapy.

 Ranked #1 on Text-To-Speech Synthesis on 20000 utterances (using extra training data)

Text-To-Speech Synthesis Time Series +2

Hierarchical Classification of Pulmonary Lesions: A Large-Scale Radio-Pathomics Study

no code implementations8 Oct 2020 Jiancheng Yang, Mingze Gao, Kaiming Kuang, Bingbing Ni, Yunlang She, Dong Xie, Chang Chen

A three-level hierarchical classification system for pulmonary lesions is developed, which covers most diseases in cancer-related diagnosis.

Computed Tomography (CT) Decision Making +2

Relational Learning between Multiple Pulmonary Nodules via Deep Set Attention Transformers

no code implementations12 Apr 2020 Jiancheng Yang, Haoran Deng, Xiaoyang Huang, Bingbing Ni, Yi Xu

In this study, we propose a multiple instance learning (MIL) approach and empirically prove the benefit to learn the relations between multiple nodules.

Multiple Instance Learning Relational Reasoning

Reinventing 2D Convolutions for 3D Images

2 code implementations24 Nov 2019 Jiancheng Yang, Xiaoyang Huang, Yi He, Jingwei Xu, Canqian Yang, Guozheng Xu, Bingbing Ni

Theoretically, ANY 2D CNN (ResNet, DenseNet, or DeepLab) is able to be converted into a 3D ACS CNN, with pretrained weight of a same parameter size.

Representation Learning

Probabilistic Radiomics: Ambiguous Diagnosis with Controllable Shape Analysis

no code implementations20 Oct 2019 Jiancheng Yang, Rongyao Fang, Bingbing Ni, Yamin Li, Yi Xu, Linguo Li

The final diagnosis is obtained by combining the ambiguity prior sample and lesion representation, and the whole network named $DenseSharp^{+}$ is end-to-end trainable.

Probabilistic Deep Learning

Evaluating and Boosting Uncertainty Quantification in Classification

no code implementations13 Sep 2019 Xiaoyang Huang, Jiancheng Yang, Linguo Li, Haoran Deng, Bingbing Ni, Yi Xu

Emergence of artificial intelligence techniques in biomedical applications urges the researchers to pay more attention on the uncertainty quantification (UQ) in machine-assisted medical decision making.

Classification Decision Making +2

Modeling Point Clouds with Self-Attention and Gumbel Subset Sampling

no code implementations CVPR 2019 Jiancheng Yang, Qiang Zhang, Bingbing Ni, Linguo Li, Jinxian Liu, Mengdie Zhou, Qi Tian

Thereby, we for the first time propose an end-to-end learnable and task-agnostic sampling operation, named Gumbel Subset Sampling (GSS), to select a representative subset of input points.

Adversarial Attack and Defense on Point Sets

no code implementations28 Feb 2019 Jiancheng Yang, Qiang Zhang, Rongyao Fang, Bingbing Ni, Jinxian Liu, Qi Tian

A set of novel 3D point cloud attack operations are proposed via pointwise gradient perturbation and adversarial point attachment / detachment.

Adversarial Attack

Cannot find the paper you are looking for? You can Submit a new open access paper.