Search Results for author: Jiangning Song

Found 9 papers, 5 papers with code

Rethinking Cancer Gene Identification through Graph Anomaly Analysis

1 code implementation23 Dec 2024 Yilong Zang, Lingfei Ren, Yue Li, Zhikang Wang, David Antony Selby, Zheng Wang, Sebastian Josef Vollmer, Hongzhi Yin, Jiangning Song, Junhang Wu

Graph neural networks (GNNs) have shown promise in integrating protein-protein interaction (PPI) networks for identifying cancer genes in recent studies.

Graph Neural Network

CoPRA: Bridging Cross-domain Pretrained Sequence Models with Complex Structures for Protein-RNA Binding Affinity Prediction

1 code implementation21 Aug 2024 Rong Han, Xiaohong Liu, Tong Pan, Jing Xu, Xiaoyu Wang, Wuyang Lan, Zhenyu Li, Zixuan Wang, Jiangning Song, Guangyu Wang, Ting Chen

We propose a Co-Former to combine the cross-modal sequence and structure information and a bi-scope pre-training strategy for improving Co-Former's interaction understanding.

Drug Design Prediction

iAMPCN: a deep-learning approach for identifying antimicrobial peptides and their functional activities

1 code implementation Briefings in Bioinformatics 2024 Jing Xu, Fuyi Li, Chen Li, Xudong Guo, Cornelia Landersdorfer, Hsin-Hui Shen, Anton Y Peleg, Jian Li, Seiya Imoto, Jianhua Yao, Tatsuya Akutsu, Jiangning Song

Then, we constructed comprehensive AMP datasets and proposed a new deep learning-based framework, iAMPCN (identification of AMPs based on CNNs), to identify AMPs and their related 22 functional activities.

Benchmarking

Histo-Genomic Knowledge Distillation For Cancer Prognosis From Histopathology Whole Slide Images

1 code implementation15 Mar 2024 Zhikang Wang, Yumeng Zhang, Yingxue Xu, Seiya Imoto, Hao Chen, Jiangning Song

G-HANet is expected to be explored as a useful tool by the research community to address the current bottleneck of insufficient histo-genomic data pairing in the context of cancer prognosis and precision oncology.

Benchmarking Knowledge Distillation +2

Multi-channel deep convolutional neural networks for multi-classifying thyroid disease

no code implementations6 Mar 2022 Xinyu Zhang, Vincent CS. Lee, Jia Rong, James C. Lee, Jiangning Song, Feng Liu

Therefore, this study proposed a novel multi-channel convolutional neural network (CNN) architecture to address the multi-class classification task of thyroid disease.

Benchmarking Binary Classification +3

Feature Erasing and Diffusion Network for Occluded Person Re-Identification

1 code implementation CVPR 2022 Zhikang Wang, Feng Zhu, Shixiang Tang, Rui Zhao, Lihuo He, Jiangning Song

With the guidance of the occlusion scores from OEM, the feature diffusion process is mainly conducted on visible body parts, which guarantees the quality of the synthesized NTP characteristics.

Occluded Person Re-Identification

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