no code implementations • 21 Feb 2025 • Yingying Sun, Jun A, Zhiwei Liu, Rui Sun, Liujia Qian, Samuel H. Payne, Wout Bittremieux, Markus Ralser, Chen Li, Yi Chen, Zhen Dong, Yasset Perez-Riverol, Asif Khan, Chris Sander, Ruedi Aebersold, Juan Antonio Vizcaíno, Jonathan R Krieger, Jianhua Yao, Han Wen, Linfeng Zhang, Yunping Zhu, Yue Xuan, Benjamin Boyang Sun, Liang Qiao, Henning Hermjakob, Haixu Tang, Huanhuan Gao, Yamin Deng, Qing Zhong, Cheng Chang, Nuno Bandeira, Ming Li, Weinan E, Siqi Sun, Yuedong Yang, Gilbert S. Omenn, Yue Zhang, Ping Xu, Yan Fu, Xiaowen Liu, Christopher M. Overall, Yu Wang, Eric W. Deutsch, Luonan Chen, Jürgen Cox, Vadim Demichev, Fuchu He, Jiaxing Huang, Huilin Jin, Chao Liu, Nan Li, Zhongzhi Luan, Jiangning Song, Kaicheng Yu, Wanggen Wan, Tai Wang, Kang Zhang, Le Zhang, Peter A. Bell, Matthias Mann, Bing Zhang, Tiannan Guo
Artificial intelligence (AI) is transforming scientific research, including proteomics.
1 code implementation • 23 Dec 2024 • Yilong Zang, Lingfei Ren, Yue Li, Zhikang Wang, David Antony Selby, Zheng Wang, Sebastian Josef Vollmer, Hongzhi Yin, Jiangning Song, Junhang Wu
Graph neural networks (GNNs) have shown promise in integrating protein-protein interaction (PPI) networks for identifying cancer genes in recent studies.
1 code implementation • 21 Aug 2024 • Rong Han, Xiaohong Liu, Tong Pan, Jing Xu, Xiaoyu Wang, Wuyang Lan, Zhenyu Li, Zixuan Wang, Jiangning Song, Guangyu Wang, Ting Chen
We propose a Co-Former to combine the cross-modal sequence and structure information and a bi-scope pre-training strategy for improving Co-Former's interaction understanding.
1 code implementation • Briefings in Bioinformatics 2024 • Jing Xu, Fuyi Li, Chen Li, Xudong Guo, Cornelia Landersdorfer, Hsin-Hui Shen, Anton Y Peleg, Jian Li, Seiya Imoto, Jianhua Yao, Tatsuya Akutsu, Jiangning Song
Then, we constructed comprehensive AMP datasets and proposed a new deep learning-based framework, iAMPCN (identification of AMPs based on CNNs), to identify AMPs and their related 22 functional activities.
1 code implementation • 15 Mar 2024 • Zhikang Wang, Yumeng Zhang, Yingxue Xu, Seiya Imoto, Hao Chen, Jiangning Song
G-HANet is expected to be explored as a useful tool by the research community to address the current bottleneck of insufficient histo-genomic data pairing in the context of cancer prognosis and precision oncology.
no code implementations • 6 Aug 2022 • Zhikang Wang, Yue Bi, Tong Pan, Xiaoyu Wang, Chris Bain, Richard Bassed, Seiya Imoto, Jianhua Yao, Jiangning Song
Multiple instance learning (MIL) is a powerful approach to classify whole slide images (WSIs) for diagnostic pathology.
no code implementations • 6 Mar 2022 • Xinyu Zhang, Vincent CS. Lee, Jia Rong, James C. Lee, Jiangning Song, Feng Liu
Therefore, this study proposed a novel multi-channel convolutional neural network (CNN) architecture to address the multi-class classification task of thyroid disease.
no code implementations • 17 Dec 2021 • Guanhua Ye, Hongzhi Yin, Tong Chen, Miao Xu, Quoc Viet Hung Nguyen, Jiangning Song
Actuated by the growing attention to personal healthcare and the pandemic, the popularity of E-health is proliferating.
1 code implementation • CVPR 2022 • Zhikang Wang, Feng Zhu, Shixiang Tang, Rui Zhao, Lihuo He, Jiangning Song
With the guidance of the occlusion scores from OEM, the feature diffusion process is mainly conducted on visible body parts, which guarantees the quality of the synthesized NTP characteristics.
Ranked #3 on
Person Re-Identification
on Occluded REID
(Rank-1 metric)