no code implementations • 15 Sep 2024 • Mohamed Sobhi Jabal, Pranav Warman, Jikai Zhang, Kartikeye Gupta, Ayush Jain, Maciej Mazurowski, Walter Wiggins, Kirti Magudia, Evan Calabrese
Purpose: To develop and evaluate an automated system for extracting structured clinical information from unstructured radiology and pathology reports using open-weights large language models (LMs) and retrieval augmented generation (RAG), and to assess the effects of model configuration variables on extraction performance.
no code implementations • 28 May 2024 • Maria Correia de Verdier, Rachit Saluja, Louis Gagnon, Dominic LaBella, Ujjwall Baid, Nourel Hoda Tahon, Martha Foltyn-Dumitru, Jikai Zhang, Maram Alafif, Saif Baig, Ken Chang, Gennaro D'Anna, Lisa Deptula, Diviya Gupta, Muhammad Ammar Haider, Ali Hussain, Michael Iv, Marinos Kontzialis, Paul Manning, Farzan Moodi, Teresa Nunes, Aaron Simon, Nico Sollmann, David Vu, Maruf Adewole, Jake Albrecht, Udunna Anazodo, Rongrong Chai, Verena Chung, Shahriar Faghani, Keyvan Farahani, Anahita Fathi Kazerooni, Eugenio Iglesias, Florian Kofler, Hongwei Li, Marius George Linguraru, Bjoern Menze, Ahmed W. Moawad, Yury Velichko, Benedikt Wiestler, Talissa Altes, Patil Basavasagar, Martin Bendszus, Gianluca Brugnara, Jaeyoung Cho, Yaseen Dhemesh, Brandon K. K. Fields, Filip Garrett, Jaime Gass, Lubomir Hadjiiski, Jona Hattangadi-Gluth, Christopher Hess, Jessica L. Houk, Edvin Isufi, Lester J. Layfield, George Mastorakos, John Mongan, Pierre Nedelec, Uyen Nguyen, Sebastian Oliva, Matthew W. Pease, Aditya Rastogi, Jason Sinclair, Robert X. Smith, Leo P. Sugrue, Jonathan Thacker, Igor Vidic, Javier Villanueva-Meyer, Nathan S. White, Mariam Aboian, Gian Marco Conte, Anders Dale, Mert R. Sabuncu, Tyler M. Seibert, Brent Weinberg, Aly Abayazeed, Raymond Huang, Sevcan Turk, Andreas M. Rauschecker, Nikdokht Farid, Philipp Vollmuth, Ayman Nada, Spyridon Bakas, Evan Calabrese, Jeffrey D. Rudie
Gliomas are the most common malignant primary brain tumors in adults and one of the deadliest types of cancer.
no code implementations • 18 Mar 2024 • Keyu Li, Hanxue Gu, Roy Colglazier, Robert Lark, Elizabeth Hubbard, Robert French, Denise Smith, Jikai Zhang, Erin McCrum, Anthony Catanzano, Joseph Cao, Leah Waldman, Maciej A. Mazurowski, Benjamin Alman
To address these challenges and the lack of interpretability found in certain existing automated methods, we have created fully automated software that not only precisely measures the Cobb angle but also provides clear visualizations of these measurements.
1 code implementation • 23 Jan 2024 • Hanxue Gu, Roy Colglazier, Haoyu Dong, Jikai Zhang, Yaqian Chen, Zafer Yildiz, YuWen Chen, Lin Li, Jichen Yang, Jay Willhite, Alex M. Meyer, Brian Guo, Yashvi Atul Shah, Emily Luo, Shipra Rajput, Sally Kuehn, Clark Bulleit, Kevin A. Wu, Jisoo Lee, Brandon Ramirez, Darui Lu, Jay M. Levin, Maciej A. Mazurowski
In our study, we propose a versatile, publicly available deep-learning model for bone segmentation in MRI across multiple standard MRI locations.
no code implementations • 6 Sep 2023 • Jikai Zhang, Carlos Santos, Christine Park, Maciej Mazurowski, Roy Colglazier
The final image classification model, trained using both manually labeled and pseudo-labeled data, had the higher weighted average AUC (WAUC: 0. 903) value and higher AUC-ROC values among all classes (normal AUC-ROC: 0. 894; abnormal AUC-ROC: 0. 896, arthroplasty AUC-ROC: 0. 990) compared to the baseline model (WAUC=0. 857; normal AUC-ROC: 0. 842; abnormal AUC-ROC: 0. 848, arthroplasty AUC-ROC: 0. 987), trained using only manually labeled data.
no code implementations • 27 Jul 2022 • Jingxi Weng, Benjamin Wildman-Tobriner, Mateusz Buda, Jichen Yang, Lisa M. Ho, Brian C. Allen, Wendy L. Ehieli, Chad M. Miller, Jikai Zhang, Maciej A. Mazurowski
Objectives: The purpose is to apply a previously validated deep learning algorithm to a new thyroid nodule ultrasound image dataset and compare its performances with radiologists.
no code implementations • 28 Jun 2022 • Jikai Zhang, Maciej M. Mazurowski, Brian C. Allen, Benjamin Wildman-Torbiner
Machine learning (ML) for diagnosis of thyroid nodules on ultrasound is an active area of research.
Optical Character Recognition
Optical Character Recognition (OCR)
1 code implementation • 16 Mar 2022 • Hanxue Gu, Keyu Li, Roy J. Colglazier, Jichen Yang, Michael Lebhar, Jonathan O'Donnell, William A. Jiranek, Richard C. Mather, Rob J. French, Nicholas Said, Jikai Zhang, Christine Park, Maciej A. Mazurowski
We propose a novel deep learning-based five-step algorithm to automatically grade KOA from posterior-anterior (PA) views of radiographs: (1) image preprocessing (2) localization of knees joints in the image using the YOLO v3-Tiny model, (3) initial assessment of the severity of osteoarthritis using a convolutional neural network-based classifier, (4) segmentation of the joints and calculation of the joint space narrowing (JSN), and (5), a combination of the JSN and the initial assessment to determine a final Kellgren-Lawrence (KL) score.