Search Results for author: Joël Lindegger

Found 3 papers, 3 papers with code

RawHash2: Mapping Raw Nanopore Signals Using Hash-Based Seeding and Adaptive Quantization

1 code implementation11 Sep 2023 Can Firtina, Melina Soysal, Joël Lindegger, Onur Mutlu

Summary: Raw nanopore signals can be analyzed while they are being generated, a process known as real-time analysis.


TargetCall: Eliminating the Wasted Computation in Basecalling via Pre-Basecalling Filtering

1 code implementation9 Dec 2022 Meryem Banu Cavlak, Gagandeep Singh, Mohammed Alser, Can Firtina, Joël Lindegger, Mohammad Sadrosadati, Nika Mansouri Ghiasi, Can Alkan, Onur Mutlu

However, for many applications, the majority of reads do no match the reference genome of interest (i. e., target reference) and thus are discarded in later steps in the genomics pipeline, wasting the basecalling computation.

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