Search Results for author: Joakim andén

Found 9 papers, 6 papers with code

Deep Scattering Spectrum

1 code implementation24 Apr 2013 Joakim andén, Stéphane Mallat

A scattering transform defines a locally translation invariant representation which is stable to time-warping deformations.

Sound Information Theory Information Theory

APPLE Picker: Automatic Particle Picking, a Low-Effort Cryo-EM Framework

1 code implementation1 Feb 2018 Ayelet Heimowitz, Joakim andén, Amit Singer

Selecting particles from the micrographs is difficult especially for small particles with low contrast.

Template Matching

Covariance estimation using conjugate gradient for 3D classification in Cryo-EM

no code implementations2 Dec 2014 Joakim andén, Eugene Katsevich, Amit Singer

Classifying structural variability in noisy projections of biological macromolecules is a central problem in Cryo-EM.

3D Classification General Classification

Hyper-Molecules: on the Representation and Recovery of Dynamical Structures, with Application to Flexible Macro-Molecular Structures in Cryo-EM

no code implementations2 Jul 2019 Roy R. Lederman, Joakim andén, Amit Singer

We introduce the ``hyper-molecule'' framework for modeling structures across different states of heterogeneous molecules, including continuums of states.

Bias and variance reduction and denoising for CTF Estimation

no code implementations9 Aug 2019 Ayelet Heimowitz, Joakim andén, Amit Singer

Our method is based on the multi-taper method for power spectral density estimation, which aims to reduce the bias and variance of the estimator.

Denoising Density Estimation

Mean-Field Microcanonical Gradient Descent

1 code implementation13 Mar 2024 Marcus Häggbom, Morten Karlsmark, Joakim andén

Microcanonical gradient descent is a sampling procedure for energy-based models allowing for efficient sampling of distributions in high dimension.

Time Series

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