Search Results for author: Johannes Schimunek

Found 3 papers, 3 papers with code

Bio-xLSTM: Generative modeling, representation and in-context learning of biological and chemical sequences

3 code implementations6 Nov 2024 Niklas Schmidinger, Lisa Schneckenreiter, Philipp Seidl, Johannes Schimunek, Pieter-Jan Hoedt, Johannes Brandstetter, Andreas Mayr, Sohvi Luukkonen, Sepp Hochreiter, Günter Klambauer

While Transformers have yielded impressive results, their quadratic runtime dependency on the sequence length complicates their use for long genomic sequences and in-context learning on proteins and chemical sequences.

Drug Discovery In-Context Learning

Context-enriched molecule representations improve few-shot drug discovery

1 code implementation24 Apr 2023 Johannes Schimunek, Philipp Seidl, Lukas Friedrich, Daniel Kuhn, Friedrich Rippmann, Sepp Hochreiter, Günter Klambauer

Our novel concept for molecule representation enrichment is to associate molecules from both the support set and the query set with a large set of reference (context) molecules through a Modern Hopfield Network.

Drug Discovery Few-Shot Learning

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