Distribution-based Sketching of Single-Cell Samples

1 code implementation • 30 Jun 2022 • Vishal Athreya Baskaran, Jolene Ranek, Siyuan Shan, Natalie Stanley, Junier B. Oliva

Modern high-throughput single-cell immune profiling technologies, such as flow and mass cytometry and single-cell RNA sequencing can readily measure the expression of a large number of protein or gene features across the millions of cells in a multi-patient cohort.

Transparent Single-Cell Set Classification with Kernel Mean Embeddings

1 code implementation • 18 Jan 2022 • Siyuan Shan, Vishal Baskaran, Haidong Yi, Jolene Ranek, Natalie Stanley, Junier Oliva

Each profiled biological sample is thus represented by a set of hundreds of thousands of multidimensional cell feature vectors, which incurs a high computational cost to predict each biological sample's associated phenotype with machine learning models.

BIG-bench Machine Learning Classification