1 code implementation • 30 Jul 2024 • Aaron Ge, Monjoy Saha, Maire A. Duggan, Petra Lenz, Mustapha Abubakar, Montserrat García-Closas, Jeya Balasubramanian, Jonas S. Almeida, Praphulla MS Bhawsar
The individual cores can be digitally extracted and then linked to metadata for analysis in a process known as de-arraying.
1 code implementation • 12 Jul 2024 • Aaron Ge, Jeya Balasubramanian, Xueyao Wu, Peter Kraft, Jonas S. Almeida
Genotype imputation enhances genetic data by predicting missing SNPs using reference haplotype information.
no code implementations • 1 Apr 2024 • Martim Afonso, Praphulla M. S. Bhawsar, Monjoy Saha, Jonas S. Almeida, Arlindo L. Oliveira
Whole Slide Images (WSI), obtained by high-resolution digital scanning of microscope slides at multiple scales, are the cornerstone of modern Digital Pathology.
2 code implementations • 13 Oct 2023 • Jeya Balaji Balasubramanian, Parichoy Pal Choudhury, Srijon Mukhopadhyay, Thomas Ahearn, Nilanjan Chatterjee, Montserrat García-Closas, Jonas S. Almeida
Objective: Absolute risk models estimate an individual's future disease risk over a specified time interval.
1 code implementation • 26 May 2019 • Han Le, Rajarsi Gupta, Le Hou, Shahira Abousamra, Danielle Fassler, Tahsin Kurc, Dimitris Samaras, Rebecca Batiste, Tianhao Zhao, Arvind Rao, Alison L. Van Dyke, ASHISH SHARMA, Erich Bremer, Jonas S. Almeida, Joel Saltz
Quantitative assessment of Tumor-TIL spatial relationships is increasingly important in both basic science and clinical aspects of breast cancer research.