Search Results for author: Jyotishman Pathak

Found 10 papers, 1 papers with code

SODA: A Natural Language Processing Package to Extract Social Determinants of Health for Cancer Studies

no code implementations6 Dec 2022 Zehao Yu, Xi Yang, Chong Dang, Prakash Adekkanattu, Braja Gopal Patra, Yifan Peng, Jyotishman Pathak, Debbie L. Wilson, Ching-Yuan Chang, Wei-Hsuan Lo-Ciganic, Thomas J. George, William R. Hogan, Yi Guo, Jiang Bian, Yonghui Wu

Objective: We aim to develop an open-source natural language processing (NLP) package, SODA (i. e., SOcial DeterminAnts), with pre-trained transformer models to extract social determinants of health (SDoH) for cancer patients, examine the generalizability of SODA to a new disease domain (i. e., opioid use), and evaluate the extraction rate of SDoH using cancer populations.

AD-BERT: Using Pre-trained contextualized embeddings to Predict the Progression from Mild Cognitive Impairment to Alzheimer's Disease

no code implementations7 Nov 2022 Chengsheng Mao, Jie Xu, Luke Rasmussen, Yikuan Li, Prakash Adekkanattu, Jennifer Pacheco, Borna Bonakdarpour, Robert Vassar, Guoqian Jiang, Fei Wang, Jyotishman Pathak, Yuan Luo

Materials and Methods: We identified 3657 patients diagnosed with MCI together with their progress notes from Northwestern Medicine Enterprise Data Warehouse (NMEDW) between 2000-2020.

A Study of Social and Behavioral Determinants of Health in Lung Cancer Patients Using Transformers-based Natural Language Processing Models

no code implementations10 Aug 2021 Zehao Yu, Xi Yang, Chong Dang, Songzi Wu, Prakash Adekkanattu, Jyotishman Pathak, Thomas J. George, William R. Hogan, Yi Guo, Jiang Bian, Yonghui Wu

In this study, we examined two state-of-the-art transformer-based NLP models, including BERT and RoBERTa, to extract SBDoH concepts from clinical narratives, applied the best performing model to extract SBDoH concepts on a lung cancer screening patient cohort, and examined the difference of SBDoH information between NLP extracted results and structured EHRs (SBDoH information captured in standard vocabularies such as the International Classification of Diseases codes).

Characterization of Time-variant and Time-invariant Assessment of Suicidality on Reddit using C-SSRS

no code implementations9 Apr 2021 Manas Gaur, Vamsi Aribandi, Amanuel Alambo, Ugur Kursuncu, Krishnaprasad Thirunarayan, Jonanthan Beich, Jyotishman Pathak, Amit Sheth

In this work, we address this knowledge gap by developing deep learning algorithms to assess suicide risk in terms of severity and temporality from Reddit data based on the Columbia Suicide Severity Rating Scale (C-SSRS).

A Machine Learning Approach to Detect Suicidal Ideation in US Veterans Based on Acoustic and Linguistic Features of Speech

no code implementations14 Sep 2020 Vaibhav Sourirajan, Anas Belouali, Mary Ann Dutton, Matthew Reinhard, Jyotishman Pathak

Among classical machine learning algorithms, the Support Vector Machine (SVM) trained on acoustic features performed best in classifying suicidal Veterans.

BIG-bench Machine Learning

Identifying Sub-Phenotypes of Acute Kidney Injury using Structured and Unstructured Electronic Health Record Data with Memory Networks

no code implementations10 Apr 2019 Zhen-Xing Xu, Jingyuan Chou, Xi Sheryl Zhang, Yuan Luo, Tamara Isakova, Prakash Adekkanattu, Jessica S. Ancker, Guoqian Jiang, Richard C. Kiefer, Jennifer A. Pacheco, Luke V. Rasmussen, Jyotishman Pathak, Fei Wang

Sub-phenotype III is with average age 65. 07$ \pm 11. 32 $ years, and was characterized moderate loss of kidney excretory function and thus more likely to develop stage II AKI (SCr $1. 69\pm 0. 32$ mg/dL, eGFR $93. 97\pm 56. 53$ mL/min/1. 73$m^2$).

Evaluating the Portability of an NLP System for Processing Echocardiograms: A Retrospective, Multi-site Observational Study

no code implementations2 Apr 2019 Prakash Adekkanattu, Guoqian Jiang, Yuan Luo, Paul R. Kingsbury, Zhen-Xing Xu, Luke V. Rasmussen, Jennifer A. Pacheco, Richard C. Kiefer, Daniel J. Stone, Pascal S. Brandt, Liang Yao, Yizhen Zhong, Yu Deng, Fei Wang, Jessica S. Ancker, Thomas R. Campion, Jyotishman Pathak

While the NLP system showed high precision and recall measurements for four target concepts (aortic valve regurgitation, left atrium size at end systole, mitral valve regurgitation, tricuspid valve regurgitation) across all sites, we found moderate or poor results for the remaining concepts and the NLP system performance varied between individual sites.

Fusing Visual, Textual and Connectivity Clues for Studying Mental Health

no code implementations19 Feb 2019 Amir Hossein Yazdavar, Mohammad Saeid Mahdavinejad, Goonmeet Bajaj, William Romine, Amirhassan Monadjemi, Krishnaprasad Thirunarayan, Amit Sheth, Jyotishman Pathak

With ubiquity of social media platforms, millions of people are sharing their online persona by expressing their thoughts, moods, emotions, feelings, and even their daily struggles with mental health issues voluntarily and publicly on social media.

Developing a Portable Natural Language Processing Based Phenotyping System

1 code implementation17 Jul 2018 Himanshu Sharma, Chengsheng Mao, Yizhen Zhang, Haleh Vatani, Liang Yao, Yizhen Zhong, Luke Rasmussen, Guoqian Jiang, Jyotishman Pathak, Yuan Luo

Our system facilitates portable phenotyping of obesity and its 15 comorbidities based on the unstructured patient discharge summaries, while achieving a performance that often ranked among the top 10 of the challenge participants.

BIG-bench Machine Learning

Semi-Supervised Approach to Monitoring Clinical Depressive Symptoms in Social Media

no code implementations16 Oct 2017 Amir Hossein Yazdavar, Hussein S. Al-Olimat, Monireh Ebrahimi, Goonmeet Bajaj, Tanvi Banerjee, Krishnaprasad Thirunarayan, Jyotishman Pathak, Amit Sheth

With the rise of social media, millions of people are routinely expressing their moods, feelings, and daily struggles with mental health issues on social media platforms like Twitter.

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