Search Results for author: Linda Shapiro

Found 26 papers, 12 papers with code

BADGR: Bundle Adjustment Diffusion Conditioned by GRadients for Wide-Baseline Floor Plan Reconstruction

no code implementations25 Mar 2025 Yuguang Li, Ivaylo Boyadzhiev, Zixuan Liu, Linda Shapiro, Alex Colburn

Reconstructing precise camera poses and floor plan layouts from wide-baseline RGB panoramas is a difficult and unsolved problem.

 Ranked #1 on Panorama Pose Estimation (N-view) on ZInd (Mean Translation Error (1 pano per space) metric)

Denoising Layout Generation +3

CrossFusion: A Multi-Scale Cross-Attention Convolutional Fusion Model for Cancer Survival Prediction

1 code implementation3 Mar 2025 Rustin Soraki, Huayu Wang, Joann G. Elmore, Linda Shapiro

Cancer survival prediction from whole slide images (WSIs) is a challenging task in computational pathology due to the large size, irregular shape, and high granularity of the WSIs.

Prognosis Survival Prediction +1

PathFinder: A Multi-Modal Multi-Agent System for Medical Diagnostic Decision-Making Applied to Histopathology

no code implementations13 Feb 2025 Fatemeh Ghezloo, Mehmet Saygin Seyfioglu, Rustin Soraki, Wisdom O. Ikezogwo, Beibin Li, Tejoram Vivekanandan, Joann G. Elmore, Ranjay Krishna, Linda Shapiro

PathFinder integrates four AI agents, the Triage Agent, Navigation Agent, Description Agent, and Diagnosis Agent, that collaboratively navigate WSIs, gather evidence, and provide comprehensive diagnoses with natural language explanations.

Decision Making Descriptive +6

MedicalNarratives: Connecting Medical Vision and Language with Localized Narratives

no code implementations7 Jan 2025 Wisdom O. Ikezogwo, Kevin Zhang, Mehmet Saygin Seyfioglu, Fatemeh Ghezloo, Linda Shapiro, Ranjay Krishna

We propose MedicalNarratives, a dataset curated from medical pedagogical videos similar in nature to data collected in Think-Aloud studies and inspired by Localized Narratives, which collects grounded image-text data by curating instructors' speech and mouse cursor movements synchronized in time.

Generating Seamless Virtual Immunohistochemical Whole Slide Images with Content and Color Consistency

no code implementations1 Oct 2024 Sitong Liu, Kechun Liu, Samuel Margolis, Wenjun Wu, Stevan R. Knezevich, David E Elder, Megan M. Eguchi, Joann G Elmore, Linda Shapiro

Immunohistochemical (IHC) stains play a vital role in a pathologist's analysis of medical images, providing crucial diagnostic information for various diseases.

Diagnostic Virtual Staining +1

Bayesian Unsupervised Disentanglement of Anatomy and Geometry for Deep Groupwise Image Registration

no code implementations4 Jan 2024 Xinzhe Luo, Xin Wang, Linda Shapiro, Chun Yuan, Jianfeng Feng, Xiahai Zhuang

We propose a novel hierarchical variational auto-encoding architecture to realise the inference procedure of the latent variables, where the registration parameters can be explicitly estimated in a mathematically interpretable fashion.

Anatomy Bayesian Inference +2

Quilt-LLaVA: Visual Instruction Tuning by Extracting Localized Narratives from Open-Source Histopathology Videos

2 code implementations CVPR 2024 Mehmet Saygin Seyfioglu, Wisdom O. Ikezogwo, Fatemeh Ghezloo, Ranjay Krishna, Linda Shapiro

Training multi-model models for histopathology requires instruction tuning datasets, which currently contain information for individual image patches, without a spatial grounding of the concepts within each patch and without a wider view of the WSI.

Diagnostic Image Captioning +2

Multi-modal Masked Autoencoders Learn Compositional Histopathological Representations

1 code implementation4 Sep 2022 Wisdom Oluchi Ikezogwo, Mehmet Saygin Seyfioglu, Linda Shapiro

However, the domain shift between natural images and digital pathology images requires further research in designing MAE for patch-level WSIs.

Self-Supervised Learning

Brain-Aware Replacements for Supervised Contrastive Learning in Detection of Alzheimer's Disease

1 code implementation11 Jul 2022 Mehmet Saygın Seyfioğlu, Zixuan Liu, Pranav Kamath, Sadjyot Gangolli, Sheng Wang, Thomas Grabowski, Linda Shapiro

On top of BAR, we propose using a soft-label-capable supervised contrastive loss, aiming to learn the relative similarity of representations that reflect how mixed are the synthetic MRIs using our soft labels.

Contrastive Learning Data Augmentation

Semi-supervised Synthesis of High-Resolution Editable Textures for 3D Humans

no code implementations CVPR 2021 Bindita Chaudhuri, Nikolaos Sarafianos, Linda Shapiro, Tony Tung

Given a segmentation mask defining the layout of the semantic regions in the texture map, our network generates high-resolution textures with a variety of styles, that are then used for rendering purposes.

Virtual Try-on Vocal Bursts Intensity Prediction

HATNet: An End-to-End Holistic Attention Network for Diagnosis of Breast Biopsy Images

1 code implementation25 Jul 2020 Sachin Mehta, Ximing Lu, Donald Weaver, Joann G. Elmore, Hannaneh Hajishirzi, Linda Shapiro

HATNet extends the bag-of-words approach and uses self-attention to encode global information, allowing it to learn representations from clinically relevant tissue structures without any explicit supervision.

Histopathological Image Classification Image Classification

Personalized Face Modeling for Improved Face Reconstruction and Motion Retargeting

no code implementations ECCV 2020 Bindita Chaudhuri, Noranart Vesdapunt, Linda Shapiro, Baoyuan Wang

Traditional methods for image-based 3D face reconstruction and facial motion retargeting fit a 3D morphable model (3DMM) to the face, which has limited modeling capacity and fail to generalize well to in-the-wild data.

3D Face Reconstruction Face Model +1

Sparsely Grouped Input Variables for Neural Networks

1 code implementation29 Nov 2019 Beibin Li, Nicholas Nuechterlein, Erin Barney, Caitlin Hudac, Pamela Ventola, Linda Shapiro, Frederick Shic

In genomic analysis, biomarker discovery, image recognition, and other systems involving machine learning, input variables can often be organized into different groups by their source or semantic category.

Meta-Learning

Learning Stylized Character Expressions from Humans

no code implementations19 Nov 2019 Deepali Aneja, Alex Colburn, Gary Faigin, Linda Shapiro, Barbara Mones

We present DeepExpr, a novel expression transfer system from humans to multiple stylized characters via deep learning.

Retrieval

A Facial Affect Analysis System for Autism Spectrum Disorder

no code implementations7 Apr 2019 Beibin Li, Sachin Mehta, Deepali Aneja, Claire Foster, Pamela Ventola, Frederick Shic, Linda Shapiro

In this paper, we introduce an end-to-end machine learning-based system for classifying autism spectrum disorder (ASD) using facial attributes such as expressions, action units, arousal, and valence.

BIG-bench Machine Learning Classification +2

Y-Net: Joint Segmentation and Classification for Diagnosis of Breast Biopsy Images

2 code implementations4 Jun 2018 Sachin Mehta, Ezgi Mercan, Jamen Bartlett, Donald Weave, Joann G. Elmore, Linda Shapiro

In this paper, we introduce a conceptually simple network for generating discriminative tissue-level segmentation masks for the purpose of breast cancer diagnosis.

Descriptive Diagnostic +3

Identifying Most Walkable Direction for Navigation in an Outdoor Environment

no code implementations21 Nov 2017 Sachin Mehta, Hannaneh Hajishirzi, Linda Shapiro

We present an approach for identifying the most walkable direction for navigation using a hand-held camera.

Decoder Segmentation +1

Learning to Segment Breast Biopsy Whole Slide Images

1 code implementation8 Sep 2017 Sachin Mehta, Ezgi Mercan, Jamen Bartlett, Donald Weaver, Joann Elmore, Linda Shapiro

We trained and applied an encoder-decoder model to semantically segment breast biopsy images into biologically meaningful tissue labels.

Decoder Diagnostic +2

Supervised Semantic Gradient Extraction Using Linear-Time Optimization

no code implementations CVPR 2013 Shulin Yang, Jue Wang, Linda Shapiro

This paper proposes a new supervised semantic edge and gradient extraction approach, which allows the user to roughly scribble over the desired region to extract semantically-dominant and coherent edges in it.

Edge Detection

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