Search Results for author: Magdalena Wysocka

Found 3 papers, 0 papers with code

Biologically-informed deep learning models for cancer: fundamental trends for encoding and interpreting oncology data

no code implementations2 Jul 2022 Magdalena Wysocka, Oskar Wysocki, Marie Zufferey, Dónal Landers, André Freitas

We discuss the recent evolutionary arch of DL models in the direction of integrating prior biological relational and network knowledge to support better generalisation (e. g. pathways or Protein-Protein-Interaction networks) and interpretability.

Metareview-informed Explainable Cytokine Storm Detection during CAR-T cell Therapy

no code implementations20 Jun 2022 Alex Bogatu, Magdalena Wysocka, Oskar Wysocki, Holly Butterworth, Donal Landers, Elaine Kilgour, Andre Freitas

Cytokine release syndrome (CRS), also known as cytokine storm, is one of the most consequential adverse effects of chimeric antigen receptor therapies that have shown promising results in cancer treatment.

Transformers and the representation of biomedical background knowledge

no code implementations4 Feb 2022 Oskar Wysocki, Zili Zhou, Paul O'Regan, Deborah Ferreira, Magdalena Wysocka, Dónal Landers, André Freitas

Specialised transformers-based models (such as BioBERT and BioMegatron) are adapted for the biomedical domain based on publicly available biomedical corpora.

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