1 code implementation • 27 Nov 2024 • Federico Del Pup, Andrea Zanola, Louis Fabrice Tshimanga, Alessandra Bertoldo, Manfredo Atzori
The last decade has witnessed a notable surge in deep learning applications for the analysis of electroencephalography (EEG) data, thanks to its demonstrated superiority over conventional statistical techniques.
1 code implementation • 20 Jun 2024 • Niccolò Marini, Stefano Marchesin, Lluis Borras Ferris, Simon Püttmann, Marek Wodzinski, Riccardo Fratti, Damian Podareanu, Alessandro Caputo, Svetla Boytcheva, Simona Vatrano, Filippo Fraggetta, Iris Nagtegaal, Gianmaria Silvello, Manfredo Atzori, Henning Müller
The increasing availability of biomedical data is helping to design more robust deep learning (DL) algorithms to analyze biomedical samples.
1 code implementation • 17 Jun 2024 • Artur Jurgas, Marek Wodzinski, Marina D'Amato, Jeroen van der Laak, Manfredo Atzori, Henning Müller
The problem of artifacts in whole slide image acquisition, prevalent in both clinical workflows and research-oriented settings, necessitates human intervention and re-scanning.
no code implementations • 19 Apr 2024 • Marek Wodzinski, Niccolò Marini, Manfredo Atzori, Henning Müller
The proposed method does not require any fine-tuning to a particular dataset and can be used directly for any desired tissue type and stain.
1 code implementation • 19 Apr 2024 • Marek Wodzinski, Niccolò Marini, Manfredo Atzori, Henning Müller
DeeperHistReg is a software framework dedicated to registering whole slide images (WSIs) acquired using multiple stains.
1 code implementation • 20 Dec 2023 • Federico Del Pup, Andrea Zanola, Louis Fabrice Tshimanga, Paolo Emilio Mazzon, Manfredo Atzori
SelfEEG is an open-source Python library developed to assist researchers in conducting Self-Supervised Learning (SSL) experiments on electroencephalography (EEG) data.
1 code implementation • 29 May 2023 • Philippe Weitz, Masi Valkonen, Leslie Solorzano, Circe Carr, Kimmo Kartasalo, Constance Boissin, Sonja Koivukoski, Aino Kuusela, Dusan Rasic, Yanbo Feng, Sandra Sinius Pouplier, Abhinav Sharma, Kajsa Ledesma Eriksson, Stephanie Robertson, Christian Marzahl, Chandler D. Gatenbee, Alexander R. A. Anderson, Marek Wodzinski, Artur Jurgas, Niccolò Marini, Manfredo Atzori, Henning Müller, Daniel Budelmann, Nick Weiss, Stefan Heldmann, Johannes Lotz, Jelmer M. Wolterink, Bruno De Santi, Abhijeet Patil, Amit Sethi, Satoshi Kondo, Satoshi Kasai, Kousuke Hirasawa, Mahtab Farrokh, Neeraj Kumar, Russell Greiner, Leena Latonen, Anne-Vibeke Laenkholm, Johan Hartman, Pekka Ruusuvuori, Mattias Rantalainen
The alignment of tissue between histopathological whole-slide-images (WSI) is crucial for research and clinical applications.
no code implementations • 6 Feb 2023 • Tommaso Giannantonio, Anna Alperovich, Piercosimo Semeraro, Manfredo Atzori, Xiaohan Zhang, Christoph Hauger, Alexander Freytag, Siri Luthman, Roeland Vandebriel, Murali Jayapala, Lien Solie, Steven de Vleeschouwer
Surgery for gliomas (intrinsic brain tumors), especially when low-grade, is challenging due to the infiltrative nature of the lesion.
no code implementations • 19 Dec 2022 • Louis Fabrice Tshimanga, Manfredo Atzori, Federico Del Pup, Maurizio Corbetta
The results show that, among a high number of available software tools, several libraries are standing out in terms of functionalities for neuroscience applications.
no code implementations • 14 Nov 2022 • Marek Wodzinski, Artur Jurgas, Niccolo Marini, Manfredo Atzori, Henning Muller
The importance of this task motivated researchers to organize the BraTS-Reg challenge, jointly with IEEE ISBI 2022 and MICCAI 2022 conferences.
1 code implementation • 17 Jan 2022 • Niccoló Marini, Manfredo Atzori, Sebastian Otálora, Stephane Marchand-Maillet, Henning Müller
Despite several methods that were developed, stain colour heterogeneity is still an unsolved challenge that limits the development of CNNs that can generalize on data from several medical centers.
no code implementations • 13 Dec 2021 • Bhakti Baheti, Satrajit Chakrabarty, Hamed Akbari, Michel Bilello, Benedikt Wiestler, Julian Schwarting, Evan Calabrese, Jeffrey Rudie, Syed Abidi, Mina Mousa, Javier Villanueva-Meyer, Brandon K. K. Fields, Florian Kofler, Russell Takeshi Shinohara, Juan Eugenio Iglesias, Tony C. W. Mok, Albert C. S. Chung, Marek Wodzinski, Artur Jurgas, Niccolo Marini, Manfredo Atzori, Henning Muller, Christoph Grobroehmer, Hanna Siebert, Lasse Hansen, Mattias P. Heinrich, Luca Canalini, Jan Klein, Annika Gerken, Stefan Heldmann, Alessa Hering, Horst K. Hahn, Mingyuan Meng, Lei Bi, Dagan Feng, Jinman Kim, Ramy A. Zeineldin, Mohamed E. Karar, Franziska Mathis-Ullrich, Oliver Burgert, Javid Abderezaei, Aymeric Pionteck, Agamdeep Chopra, Mehmet Kurt, Kewei Yan, Yonghong Yan, Zhe Tang, Jianqiang Ma, Sahar Almahfouz Nasser, Nikhil Cherian Kurian, Mohit Meena, Saqib Shamsi, Amit Sethi, Nicholas J. Tustison, Brian B. Avants, Philip Cook, James C. Gee, Lin Tian, Hastings Greer, Marc Niethammer, Andrew Hoopes, Malte Hoffmann, Adrian V. Dalca, Stergios Christodoulidis, Theo Estiene, Maria Vakalopoulou, Nikos Paragios, Daniel S. Marcus, Christos Davatzikos, Aristeidis Sotiras, Bjoern Menze, Spyridon Bakas, Diana Waldmannstetter
Registration of longitudinal brain MRI scans containing pathologies is challenging due to dramatic changes in tissue appearance.
no code implementations • MICCAI Workshop COMPAY 2021 • Niccolò Marini, Sebastian Otálora, Francesco Ciompi, Gianmaria Silvello, Stefano Marchesin, Simona Vatrano, Gianziana Buttafuoco, Manfredo Atzori, Henning Müller
Global annotations refer to global findings in the high-resolution image and do not include information about the location of the regions of interest or the magnification levels used to identify a finding.
no code implementations • 29 Aug 2017 • Andrea Gigli, Arjan Gijsberts, Valentina Gregori, Matteo Cognolato, Manfredo Atzori, Barbara Caputo
In this paper, we develop an automated way to detect stable fixations and show that gaze information is indeed helpful in predicting hand movements.