Simulation-to-Real domain adaptation with teacher-student learning for endoscopic instrument segmentation

no code implementations • 2 Mar 2021 • Manish Sahu, Anirban Mukhopadhyay, Stefan Zachow

Conclusion: We show that our proposed approach can successfully exploit the unlabeled real endoscopic video frames and improve generalization performance over pure simulation-based training and the previous state-of-the-art.

Scene Understanding Unsupervised Domain Adaptation

Endo-Sim2Real: Consistency learning-based domain adaptation for instrument segmentation

no code implementations • 22 Jul 2020 • Manish Sahu, Ronja Strömsdörfer, Anirban Mukhopadhyay, Stefan Zachow

Surgical tool segmentation in endoscopic videos is an important component of computer assisted interventions systems.

Domain Adaptation

VerSe: A Vertebrae Labelling and Segmentation Benchmark for Multi-detector CT Images

2 code implementations • 24 Jan 2020 • Anjany Sekuboyina, Malek E. Husseini, Amirhossein Bayat, Maximilian Löffler, Hans Liebl, Hongwei Li, Giles Tetteh, Jan Kukačka, Christian Payer, Darko Štern, Martin Urschler, Maodong Chen, Dalong Cheng, Nikolas Lessmann, Yujin Hu, Tianfu Wang, Dong Yang, Daguang Xu, Felix Ambellan, Tamaz Amiranashvili, Moritz Ehlke, Hans Lamecker, Sebastian Lehnert, Marilia Lirio, Nicolás Pérez de Olaguer, Heiko Ramm, Manish Sahu, Alexander Tack, Stefan Zachow, Tao Jiang, Xinjun Ma, Christoph Angerman, Xin Wang, Kevin Brown, Alexandre Kirszenberg, Élodie Puybareau, Di Chen, Yiwei Bai, Brandon H. Rapazzo, Timyoas Yeah, Amber Zhang, Shangliang Xu, Feng Hou, Zhiqiang He, Chan Zeng, Zheng Xiangshang, Xu Liming, Tucker J. Netherton, Raymond P. Mumme, Laurence E. Court, Zixun Huang, Chenhang He, Li-Wen Wang, Sai Ho Ling, Lê Duy Huynh, Nicolas Boutry, Roman Jakubicek, Jiri Chmelik, Supriti Mulay, Mohanasankar Sivaprakasam, Johannes C. Paetzold, Suprosanna Shit, Ivan Ezhov, Benedikt Wiestler, Ben Glocker, Alexander Valentinitsch, Markus Rempfler, Björn H. Menze, Jan S. Kirschke

Two datasets containing a total of 374 multi-detector CT scans from 355 patients were prepared and 4505 vertebrae have individually been annotated at voxel-level by a human-machine hybrid algorithm (https://osf. io/nqjyw/, https://osf. io/t98fz/).

Tool and Phase recognition using contextual CNN features

no code implementations • 27 Oct 2016 • Manish Sahu, Anirban Mukhopadhyay, Angelika Szengel, Stefan Zachow

A transfer learning method for generating features suitable for surgical tools and phase recognition from the ImageNet classification features [1] is proposed here.

Classification General Classification +3