Search Results for author: Marcin P. Joachimiak

Found 7 papers, 7 papers with code

Explaining word embeddings with perfect fidelity: Case study in research impact prediction

1 code implementation24 Sep 2024 Lucie Dvorackova, Marcin P. Joachimiak, Michal Cerny, Adriana Kubecova, Vilem Sklenak, Tomas Kliegr

Best performing approaches for scholarly document quality prediction are based on embedding models, which do not allow direct explanation of classifiers as distinct words no longer correspond to the input features for model training.

Feature Importance regression +1

The Artificial Intelligence Ontology: LLM-assisted construction of AI concept hierarchies

1 code implementation3 Apr 2024 Marcin P. Joachimiak, Mark A. Miller, J. Harry Caufield, Ryan Ly, Nomi L. Harris, Andrew Tritt, Christopher J. Mungall, Kristofer E. Bouchard

This approach not only ensures the ontology's relevance amidst the fast-paced advancements in AI but also significantly enhances its utility for researchers, developers, and educators by simplifying the integration of new AI concepts and methodologies.

Gene Set Summarization using Large Language Models

1 code implementation21 May 2023 Marcin P. Joachimiak, J. Harry Caufield, Nomi L. Harris, HyeongSik Kim, Christopher J. Mungall

This is typically done as a statistical enrichment analysis that measures the over- or under-representation of biological function terms associated with genes or their properties, based on curated assertions from a knowledge base (KB) such as the Gene Ontology (GO).

Developing a Knowledge Graph Framework for Pharmacokinetic Natural Product-Drug Interactions

1 code implementation24 Sep 2022 Sanya B. Taneja, Tiffany J. Callahan, Mary F. Paine, Sandra L. Kane-Gill, Halil Kilicoglu, Marcin P. Joachimiak, Richard D. Boyce

NP-KG is a heterogeneous KG with biomedical ontologies, linked data, and full texts of the scientific literature, constructed with the Phenotype Knowledge Translator framework and the semantic relation extraction systems, SemRep and Integrated Network and Dynamic Reasoning Assembler.

Relation Extraction

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