Search Results for author: Matthew Sinclair

Found 16 papers, 5 papers with code

Improved 3D Whole Heart Geometry from Sparse CMR Slices

1 code implementation14 Aug 2024 Yiyang Xu, Hao Xu, Matthew Sinclair, Esther Puyol-Antón, Steven A Niederer, Amedeo Chiribiri, Steven E Williams, Michelle C Williams, Alistair A Young

In this study, we explore the combination of Slice Shifting Algorithm (SSA), Spatial Transformer Network (STN), and Label Transformer Network (LTN) to: 1) correct respiratory motion between segmented slices, and 2) transform sparse segmentation data into dense segmentation.

Computed Tomography (CT) Segmentation

Pay Attention to the Atlas: Atlas-Guided Test-Time Adaptation Method for Robust 3D Medical Image Segmentation

no code implementations2 Jul 2023 Jingjie Guo, Weitong Zhang, Matthew Sinclair, Daniel Rueckert, Chen Chen

In addition, different from most existing TTA methods which restrict the adaptation to batch normalization blocks in the segmentation network only, we further exploit the use of channel and spatial attention blocks for improved adaptability at test time.

Image Segmentation Medical Image Segmentation +4

Image To Tree with Recursive Prompting

no code implementations1 Jan 2023 James Batten, Matthew Sinclair, Ben Glocker, Michiel Schaap

Extracting complex structures from grid-based data is a common key step in automated medical image analysis.

Medical Image Analysis

Atlas-ISTN: Joint Segmentation, Registration and Atlas Construction with Image-and-Spatial Transformer Networks

no code implementations18 Dec 2020 Matthew Sinclair, Andreas Schuh, Karl Hahn, Kersten Petersen, Ying Bai, James Batten, Michiel Schaap, Ben Glocker

We propose Atlas-ISTN, a framework that jointly learns segmentation and registration on 2D and 3D image data, and constructs a population-derived atlas in the process.

Image Registration Segmentation +1

Weakly Supervised Estimation of Shadow Confidence Maps in Fetal Ultrasound Imaging

no code implementations20 Nov 2018 Qingjie Meng, Matthew Sinclair, Veronika Zimmer, Benjamin Hou, Martin Rajchl, Nicolas Toussaint, Ozan Oktay, Jo Schlemper, Alberto Gomez, James Housden, Jacqueline Matthew, Daniel Rueckert, Julia Schnabel, Bernhard Kainz

Our method is more consistent than human annotation, and outperforms the state-of-the-art quantitatively in shadow segmentation and qualitatively in confidence estimation of shadow regions.

Diagnostic Image Classification +2

A Comprehensive Approach for Learning-based Fully-Automated Inter-slice Motion Correction for Short-Axis Cine Cardiac MR Image Stacks

no code implementations3 Oct 2018 Giacomo Tarroni, Ozan Oktay, Matthew Sinclair, Wenjia Bai, Andreas Schuh, Hideaki Suzuki, Antonio de Marvao, Declan O'Regan, Stuart Cook, Daniel Rueckert

If long axis (LA) images are available, PSMs are generated for them and combined to create the target PSM; if not, the target PSM is produced from the same stack using a 3D model trained from motion-free stacks.

Motion Compensation

Weakly Supervised Localisation for Fetal Ultrasound Images

2 code implementations2 Aug 2018 Nicolas Toussaint, Bishesh Khanal, Matthew Sinclair, Alberto Gomez, Emily Skelton, Jacqueline Matthew, Julia A. Schnabel

This paper addresses the task of detecting and localising fetal anatomical regions in 2D ultrasound images, where only image-level labels are present at training, i. e. without any localisation or segmentation information.

Pose Estimation Segmentation

Fast Multiple Landmark Localisation Using a Patch-based Iterative Network

1 code implementation18 Jun 2018 Yuanwei Li, Amir Alansary, Juan J. Cerrolaza, Bishesh Khanal, Matthew Sinclair, Jacqueline Matthew, Chandni Gupta, Caroline Knight, Bernhard Kainz, Daniel Rueckert

PIN is computationally efficient since the inference stage only selectively samples a small number of patches in an iterative fashion rather than a dense sampling at every location in the volume.

Multi-Task Learning

Ensembles of Multiple Models and Architectures for Robust Brain Tumour Segmentation

no code implementations4 Nov 2017 Konstantinos Kamnitsas, Wenjia Bai, Enzo Ferrante, Steven McDonagh, Matthew Sinclair, Nick Pawlowski, Martin Rajchl, Matthew Lee, Bernhard Kainz, Daniel Rueckert, Ben Glocker

Deep learning approaches such as convolutional neural nets have consistently outperformed previous methods on challenging tasks such as dense, semantic segmentation.

Deep Learning Position +1

Automated cardiovascular magnetic resonance image analysis with fully convolutional networks

1 code implementation25 Oct 2017 Wenjia Bai, Matthew Sinclair, Giacomo Tarroni, Ozan Oktay, Martin Rajchl, Ghislain Vaillant, Aaron M. Lee, Nay Aung, Elena Lukaschuk, Mihir M. Sanghvi, Filip Zemrak, Kenneth Fung, Jose Miguel Paiva, Valentina Carapella, Young Jin Kim, Hideaki Suzuki, Bernhard Kainz, Paul M. Matthews, Steffen E. Petersen, Stefan K. Piechnik, Stefan Neubauer, Ben Glocker, Daniel Rueckert

By combining FCN with a large-scale annotated dataset, the proposed automated method achieves a high performance on par with human experts in segmenting the LV and RV on short-axis CMR images and the left atrium (LA) and right atrium (RA) on long-axis CMR images.

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