no code implementations • 16 Jul 2024 • Yaşar Utku Alçalar, Mehmet Akçakaya
However, application of these ideas for solving inverse problems with diffusion models remain challenging, as these noise schedules do not perform well when using empirical tuning for the forward model log-likelihood term weights.
no code implementations • 9 Dec 2023 • Hongyi Gu, Chi Zhang, Zidan Yu, Christoph Rettenmeier, V. Andrew Stenger, Mehmet Akçakaya
Functional MRI (fMRI) is an important tool for non-invasive studies of brain function.
no code implementations • 9 Nov 2022 • Jinghan Jia, Mingyi Hong, Yimeng Zhang, Mehmet Akçakaya, Sijia Liu
We find a new instability source of MRI image reconstruction, i. e., the lack of reconstruction robustness against spatial transformations of an input, e. g., rotation and cutout.
no code implementations • 17 Apr 2022 • Hongyi Gu, Burhaneddin Yaman, Steen Moeller, Il Yong Chun, Mehmet Akçakaya
Recent studies show that deep learning (DL) based MRI reconstruction outperforms conventional methods, such as parallel imaging and compressed sensing (CS), in multiple applications.
no code implementations • 23 Mar 2022 • Kerstin Hammernik, Thomas Küstner, Burhaneddin Yaman, Zhengnan Huang, Daniel Rueckert, Florian Knoll, Mehmet Akçakaya
We consider inverse problems with both linear and non-linear forward models for computational MRI, and review the classical approaches for solving these.
no code implementations • 17 May 2021 • Mehmet Akçakaya, Burhaneddin Yaman, Hyungjin Chung, Jong Chul Ye
Recently, deep learning approaches have become the main research frontier for biological image reconstruction and enhancement problems thanks to their high performance, along with their ultra-fast inference times.
no code implementations • 12 May 2021 • Omer Burak Demirel, Burhaneddin Yaman, Logan Dowdle, Steen Moeller, Luca Vizioli, Essa Yacoub, John Strupp, Cheryl A. Olman, Kâmil Uğurbil, Mehmet Akçakaya
High spatial and temporal resolution across the whole brain is essential to accurately resolve neural activities in fMRI.
no code implementations • 10 May 2021 • Omer Burak Demirel, Burhaneddin Yaman, Logan Dowdle, Steen Moeller, Luca Vizioli, Essa Yacoub, John Strupp, Cheryl A. Olman, Kâmil Uğurbil, Mehmet Akçakaya
Self-supervised learning that does not require fully-sampled data has recently been proposed and has shown similar performance to supervised learning.
no code implementations • 25 Feb 2021 • Chi Zhang, Jinghan Jia, Burhaneddin Yaman, Steen Moeller, Sijia Liu, Mingyi Hong, Mehmet Akçakaya
Although deep learning (DL) has received much attention in accelerated MRI, recent studies suggest small perturbations may lead to instabilities in DL-based reconstructions, leading to concern for their clinical application.
1 code implementation • ICLR 2022 • Burhaneddin Yaman, Seyed Amir Hossein Hosseini, Mehmet Akçakaya
Moreover, recent studies show that database-trained models may not generalize well when the unseen measurements differ in terms of sampling pattern, acceleration rate, SNR, image contrast, and anatomy.
no code implementations • 18 Nov 2020 • Burhaneddin Yaman, Chetan Shenoy, Zilin Deng, Steen Moeller, Hossam El-Rewaidy, Reza Nezafat, Mehmet Akçakaya
Late gadolinium enhancement (LGE) cardiac MRI (CMR) is the clinical standard for diagnosis of myocardial scar.
no code implementations • 26 Oct 2020 • Burhaneddin Yaman, Seyed Amir Hossein Hosseini, Steen Moeller, Mehmet Akçakaya
Physics-guided deep learning (PG-DL) via algorithm unrolling has received significant interest for improved image reconstruction, including MRI applications.
no code implementations • 13 Aug 2020 • Burhaneddin Yaman, Hongyi Gu, Seyed Amir Hossein Hosseini, Omer Burak Demirel, Steen Moeller, Jutta Ellermann, Kâmil Uğurbil, Mehmet Akçakaya
In this study, we propose an improved self-supervised learning strategy that more efficiently uses the acquired data to train a physics-guided reconstruction network without a database of fully-sampled data.
no code implementations • 16 Jun 2020 • Burhaneddin Yaman, Seyed Amir Hossein Hosseini, Mehmet Akçakaya
These methods rely on a masking approach that divides the image pixels into two disjoint sets, where one is used as input to the network while the other is used to define the loss.
no code implementations • 12 May 2020 • Seyed Amir Hossein Hosseini, Burhaneddin Yaman, Steen Moeller, Mehmet Akçakaya
In addition, the proposed approach has the potential to reduce the risks of generalization to rare pathological conditions, which may be unavailable in the training data.
2 code implementations • 16 Dec 2019 • Burhaneddin Yaman, Seyed Amir Hossein Hosseini, Steen Moeller, Jutta Ellermann, Kâmil Uğurbil, Mehmet Akçakaya
Results: Results on five different knee sequences at acceleration rate of 4 shows that proposed self-supervised approach performs closely with supervised learning, while significantly outperforming conventional compressed sensing and parallel imaging, as characterized by quantitative metrics and a clinical reader study.
no code implementations • 16 Dec 2019 • Seyed Amir Hossein Hosseini, Burhaneddin Yaman, Steen Moeller, Mingyi Hong, Mehmet Akçakaya
These methods unroll iterative optimization algorithms to solve the inverse problem objective function, by alternating between domain-specific data consistency and data-driven regularization via neural networks.
1 code implementation • 21 Oct 2019 • Burhaneddin Yaman, Seyed Amir Hossein Hosseini, Steen Moeller, Jutta Ellermann, Kâmil Uǧurbil, Mehmet Akçakaya
In this work, we tackle this issue and propose a self-supervised learning strategy that enables physics-based DL reconstruction without fully-sampled data.