no code implementations • 3 Mar 2025 • Tassilo Wald, Saikat Roy, Fabian Isensee, Constantin Ulrich, Sebastian Ziegler, Dasha Trofimova, Raphael Stock, Michael Baumgartner, Gregor Köhler, Klaus Maier-Hein
Transformers have achieved remarkable success across multiple fields, yet their impact on 3D medical image segmentation remains limited with convolutional networks still dominating major benchmarks.
2 code implementations • 7 Feb 2025 • Muhammad Imran, Jonathan R. Krebs, Vishal Balaji Sivaraman, Teng Zhang, Amarjeet Kumar, Walker R. Ueland, Michael J. Fassler, Jinlong Huang, Xiao Sun, Lisheng Wang, Pengcheng Shi, Maximilian Rokuss, Michael Baumgartner, Yannick Kirchhof, Klaus H. Maier-Hein, Fabian Isensee, Shuolin Liu, Bing Han, Bong Thanh Nguyen, Dong-Jin Shin, Park Ji-Woo, Mathew Choi, Kwang-Hyun Uhm, Sung-Jea Ko, Chanwoong Lee, Jaehee Chun, Jin Sung Kim, Minghui Zhang, Hanxiao Zhang, Xin You, Yun Gu, Zhaohong Pan, Xuan Liu, Xiaokun Liang, Markus Tiefenthaler, Enrique Almar-Munoz, Matthias Schwab, Mikhail Kotyushev, Rostislav Epifanov, Marek Wodzinski, Henning Muller, Abdul Qayyum, Moona Mazher, Steven A. Niederer, Zhiwei Wang, Kaixiang Yang, Jintao Ren, Stine Sofia Korreman, Yuchong Gao, Hongye Zeng, Haoyu Zheng, Rui Zheng, Jinghua Yue, Fugen Zhou, Bo Liu, Alexander Cosman, Muxuan Liang, Chang Zhao, Gilbert R. Upchurch Jr., Jun Ma, Yuyin Zhou, Michol A. Cooper, Wei Shao
Furthermore, no open-source dataset is currently available to support the development of multi-class aortic segmentation methods.
no code implementations • 26 Jan 2025 • Gongning Luo, Mingwang Xu, Hongyu Chen, Xinjie Liang, Xing Tao, Dong Ni, Hyunsu Jeong, Chulhong Kim, Raphael Stock, Michael Baumgartner, Yannick Kirchhoff, Maximilian Rokuss, Klaus Maier-Hein, Zhikai Yang, Tianyu Fan, Nicolas Boutry, Dmitry Tereshchenko, Arthur Moine, Maximilien Charmetant, Jan Sauer, Hao Du, Xiang-Hui Bai, Vipul Pai Raikar, Ricardo Montoya-del-Angel, Robert Marti, Miguel Luna, Dongmin Lee, Abdul Qayyum, Moona Mazher, Qihui Guo, Changyan Wang, Navchetan Awasthi, Qiaochu Zhao, Wei Wang, Kuanquan Wang, Qiucheng Wang, Suyu Dong
This initiative aims to spearhead research in this field and create a definitive benchmark for tasks associated with 3D ABUS image analysis.
no code implementations • 17 Dec 2024 • Maximilian Fischer, Peter Neher, Peter Schüffler, Sebastian Ziegler, Shuhan Xiao, Robin Peretzke, David Clunie, Constantin Ulrich, Michael Baumgartner, Alexander Muckenhuber, Silvia Dias Almeida, Michael Götz, Jens Kleesiek, Marco Nolden, Rickmer Braren, Klaus Maier-Hein
While prior research addresses perceptual image quality and downstream performance independently of each other, we jointly evaluate compression schemes for perceptual and downstream task quality on four different datasets.
1 code implementation • 6 Nov 2024 • Pedro R. A. S. Bassi, Wenxuan Li, Yucheng Tang, Fabian Isensee, Zifu Wang, Jieneng Chen, Yu-Cheng Chou, Yannick Kirchhoff, Maximilian Rokuss, Ziyan Huang, Jin Ye, Junjun He, Tassilo Wald, Constantin Ulrich, Michael Baumgartner, Saikat Roy, Klaus H. Maier-Hein, Paul Jaeger, Yiwen Ye, Yutong Xie, Jianpeng Zhang, Ziyang Chen, Yong Xia, Zhaohu Xing, Lei Zhu, Yousef Sadegheih, Afshin Bozorgpour, Pratibha Kumari, Reza Azad, Dorit Merhof, Pengcheng Shi, Ting Ma, Yuxin Du, Fan Bai, Tiejun Huang, Bo Zhao, Haonan Wang, Xiaomeng Li, Hanxue Gu, Haoyu Dong, Jichen Yang, Maciej A. Mazurowski, Saumya Gupta, Linshan Wu, Jiaxin Zhuang, Hao Chen, Holger Roth, Daguang Xu, Matthew B. Blaschko, Sergio Decherchi, Andrea Cavalli, Alan L. Yuille, Zongwei Zhou
We are committed to expanding this benchmark to encourage more innovation of AI algorithms for the medical domain.
1 code implementation • 30 Oct 2024 • Tassilo Wald, Constantin Ulrich, Gregor Köhler, David Zimmerer, Stefan Denner, Michael Baumgartner, Fabian Isensee, Priyank Jaini, Klaus H. Maier-Hein
In this paper, we propose to solve this through semantic RSMs, which are invariant to spatial permutation.
1 code implementation • 1 Jul 2024 • Jeremias Traub, Till J. Bungert, Carsten T. Lüth, Michael Baumgartner, Klaus H. Maier-Hein, Lena Maier-Hein, Paul F Jaeger
Selective Classification, wherein models can reject low-confidence predictions, promises reliable translation of machine-learning based classification systems to real-world scenarios such as clinical diagnostics.
no code implementations • 24 Apr 2024 • Constantin Ulrich, Catherine Knobloch, Julius C. Holzschuh, Tassilo Wald, Maximilian R. Rokuss, Maximilian Zenk, Maximilian Fischer, Michael Baumgartner, Fabian Isensee, Klaus H. Maier-Hein
This limitation leads to false predictions when applied to body regions beyond the FOV of the training data.
3 code implementations • 15 Apr 2024 • Fabian Isensee, Tassilo Wald, Constantin Ulrich, Michael Baumgartner, Saikat Roy, Klaus Maier-Hein, Paul F. Jaeger
The release of nnU-Net marked a paradigm shift in 3D medical image segmentation, demonstrating that a properly configured U-Net architecture could still achieve state-of-the-art results.
1 code implementation • 22 Mar 2024 • Nicolas Baumann, Michael Baumgartner, Edoardo Ghignone, Jonas Kühne, Tobias Fischer, Yung-Hsu Yang, Marc Pollefeys, Michele Magno
To enable self-driving vehicles accurate detection and tracking of surrounding objects is essential.
Ranked #4 on
3D Multi-Object Tracking
on nuscenes Camera-Radar
no code implementations • 21 Sep 2023 • Francesca Venturini, Silvan Fluri, Manas Mejari, Michael Baumgartner, Dario Piga, Umberto Michelucci
This work systematically investigates the oxidation of extra virgin olive oil (EVOO) under accelerated storage conditions with UV absorption and total fluorescence spectroscopy.
2 code implementations • 7 Sep 2023 • Balint Kovacs, Nils Netzer, Michael Baumgartner, Carolin Eith, Dimitrios Bounias, Clara Meinzer, Paul F. Jaeger, Kevin S. Zhang, Ralf Floca, Adrian Schrader, Fabian Isensee, Regula Gnirs, Magdalena Goertz, Viktoria Schuetz, Albrecht Stenzinger, Markus Hohenfellner, Heinz-Peter Schlemmer, Ivo Wolf, David Bonekamp, Klaus H. Maier-Hein
Data augmentation (DA) is a key factor in medical image analysis, such as in prostate cancer (PCa) detection on magnetic resonance images.
no code implementations • 5 Jul 2023 • Tassilo Wald, Constantin Ulrich, Fabian Isensee, David Zimmerer, Gregor Koehler, Michael Baumgartner, Klaus H. Maier-Hein
Given an ensemble of independently trained models, this results in correlated predictions and common failure modes.
no code implementations • 27 Jun 2023 • Marc K. Ickler, Michael Baumgartner, Saikat Roy, Tassilo Wald, Klaus H. Maier-Hein
The accurate detection of suspicious regions in medical images is an error-prone and time-consuming process required by many routinely performed diagnostic procedures.
no code implementations • 9 Apr 2023 • Saikat Roy, Gregor Koehler, Michael Baumgartner, Constantin Ulrich, Jens Petersen, Fabian Isensee, Klaus Maier-Hein
Owing to success in the data-rich domain of natural images, Transformers have recently become popular in medical image segmentation.
1 code implementation • 25 Mar 2023 • Constantin Ulrich, Fabian Isensee, Tassilo Wald, Maximilian Zenk, Michael Baumgartner, Klaus H. Maier-Hein
Our findings offer a new direction for the medical imaging community to effectively utilize the wealth of available data for improved segmentation performance.
no code implementations • 20 Mar 2023 • Michael Baumgartner, Peter M. Full, Klaus H. Maier-Hein
The accurate detection of mediastinal lesions is one of the rarely explored medical object detection problems.
1 code implementation • 17 Mar 2023 • Saikat Roy, Gregor Koehler, Constantin Ulrich, Michael Baumgartner, Jens Petersen, Fabian Isensee, Paul F. Jaeger, Klaus Maier-Hein
This leads to state-of-the-art performance on 4 tasks on CT and MRI modalities and varying dataset sizes, representing a modernized deep architecture for medical image segmentation.
Ranked #1 on
Medical Image Segmentation
on AMOS
no code implementations • 3 Feb 2023 • Annika Reinke, Minu D. Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Carole H. Sudre, Laura Acion, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Matthew Blaschko, Florian Buettner, M. Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Robert Haase, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Jens Kleesiek, Florian Kofler, Thijs Kooi, Annette Kopp-Schneider, Michal Kozubek, Anna Kreshuk, Tahsin Kurc, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern Menze, Karel G. M. Moons, Henning Müller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M. Rafelski, Nasir Rajpoot, Mauricio Reyes, Michael A. Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I. Sánchez, Shravya Shetty, Maarten van Smeden, Ronald M. Summers, Abdel A. Taha, Aleksei Tiulpin, Sotirios A. Tsaftaris, Ben van Calster, Gaël Varoquaux, Manuel Wiesenfarth, Ziv R. Yaniv, Paul F. Jäger, Lena Maier-Hein
Validation metrics are key for the reliable tracking of scientific progress and for bridging the current chasm between artificial intelligence (AI) research and its translation into practice.
2 code implementations • 4 Nov 2022 • M. Jorge Cardoso, Wenqi Li, Richard Brown, Nic Ma, Eric Kerfoot, Yiheng Wang, Benjamin Murrey, Can Zhao, Dong Yang, Vishwesh Nath, Yufan He, Ziyue Xu, Ali Hatamizadeh, Andriy Myronenko, Wentao Zhu, Yun Liu, Mingxin Zheng, Yucheng Tang, Isaac Yang, Michael Zephyr, Behrooz Hashemian, Sachidanand Alle, Mohammad Zalbagi Darestani, Charlie Budd, Marc Modat, Tom Vercauteren, Guotai Wang, Yiwen Li, Yipeng Hu, Yunguan Fu, Benjamin Gorman, Hans Johnson, Brad Genereaux, Barbaros S. Erdal, Vikash Gupta, Andres Diaz-Pinto, Andre Dourson, Lena Maier-Hein, Paul F. Jaeger, Michael Baumgartner, Jayashree Kalpathy-Cramer, Mona Flores, Justin Kirby, Lee A. D. Cooper, Holger R. Roth, Daguang Xu, David Bericat, Ralf Floca, S. Kevin Zhou, Haris Shuaib, Keyvan Farahani, Klaus H. Maier-Hein, Stephen Aylward, Prerna Dogra, Sebastien Ourselin, Andrew Feng
For AI models to be used clinically, they need to be made safe, reproducible and robust, and the underlying software framework must be aware of the particularities (e. g. geometry, physiology, physics) of medical data being processed.
1 code implementation • 3 Jun 2022 • Lena Maier-Hein, Annika Reinke, Patrick Godau, Minu D. Tizabi, Florian Buettner, Evangelia Christodoulou, Ben Glocker, Fabian Isensee, Jens Kleesiek, Michal Kozubek, Mauricio Reyes, Michael A. Riegler, Manuel Wiesenfarth, A. Emre Kavur, Carole H. Sudre, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, Tim Rädsch, Laura Acion, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Matthew Blaschko, M. Jorge Cardoso, Veronika Cheplygina, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Robert Haase, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Pierre Jannin, Charles E. Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Florian Kofler, Annette Kopp-Schneider, Anna Kreshuk, Tahsin Kurc, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern Menze, Karel G. M. Moons, Henning Müller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Nasir Rajpoot, Nicola Rieke, Julio Saez-Rodriguez, Clara I. Sánchez, Shravya Shetty, Maarten van Smeden, Ronald M. Summers, Abdel A. Taha, Aleksei Tiulpin, Sotirios A. Tsaftaris, Ben van Calster, Gaël Varoquaux, Paul F. Jäger
The framework was developed in a multi-stage Delphi process and is based on the novel concept of a problem fingerprint - a structured representation of the given problem that captures all aspects that are relevant for metric selection, from the domain interest to the properties of the target structure(s), data set and algorithm output.
1 code implementation • 1 Jun 2021 • Michael Baumgartner, Paul F. Jaeger, Fabian Isensee, Klaus H. Maier-Hein
Simultaneous localisation and categorization of objects in medical images, also referred to as medical object detection, is of high clinical relevance because diagnostic decisions often depend on rating of objects rather than e. g. pixels.
1 code implementation • 12 Apr 2021 • Annika Reinke, Minu D. Tizabi, Carole H. Sudre, Matthias Eisenmann, Tim Rädsch, Michael Baumgartner, Laura Acion, Michela Antonelli, Tal Arbel, Spyridon Bakas, Peter Bankhead, Arriel Benis, Matthew Blaschko, Florian Buettner, M. Jorge Cardoso, Jianxu Chen, Veronika Cheplygina, Evangelia Christodoulou, Beth Cimini, Gary S. Collins, Sandy Engelhardt, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Robert Haase, Fred Hamprecht, Daniel A. Hashimoto, Doreen Heckmann-Nötzel, Peter Hirsch, Michael M. Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Alan Karthikesalingam, A. Emre Kavur, Hannes Kenngott, Jens Kleesiek, Andreas Kleppe, Sven Kohler, Florian Kofler, Annette Kopp-Schneider, Thijs Kooi, Michal Kozubek, Anna Kreshuk, Tahsin Kurc, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern Menze, David Moher, Karel G. M. Moons, Henning Müller, Brennan Nichyporuk, Felix Nickel, M. Alican Noyan, Jens Petersen, Gorkem Polat, Susanne M. Rafelski, Nasir Rajpoot, Mauricio Reyes, Nicola Rieke, Michael Riegler, Hassan Rivaz, Julio Saez-Rodriguez, Clara I. Sánchez, Julien Schroeter, Anindo Saha, M. Alper Selver, Lalith Sharan, Shravya Shetty, Maarten van Smeden, Bram Stieltjes, Ronald M. Summers, Abdel A. Taha, Aleksei Tiulpin, Sotirios A. Tsaftaris, Ben van Calster, Gaël Varoquaux, Manuel Wiesenfarth, Ziv R. Yaniv, Paul Jäger, Lena Maier-Hein
While the importance of automatic image analysis is continuously increasing, recent meta-research revealed major flaws with respect to algorithm validation.
no code implementations • 9 Apr 2021 • Francesca Venturini, Michela Sperti, Umberto Michelucci, Ivo Herzig, Michael Baumgartner, Josep Palau Caballero, Arturo Jimenez, and Marco Agostino Deriu
Extra virgin olive oil (EVOO) is the highest quality of olive oil and is characterized by highly beneficial nutritional properties.
no code implementations • 27 Jul 2020 • Umberto Michelucci, Michael Baumgartner, Francesca Venturini
In the classical approach, this change is related to an oxygen concentration using the Stern-Volmer equation.
1 code implementation • 14 Jun 2019 • Christoph Haarburger, Michael Baumgartner, Daniel Truhn, Mirjam Broeckmann, Hannah Schneider, Simone Schrading, Christiane Kuhl, Dorit Merhof
Achieving an AUROC of 0. 89, we compare the performance of our approach to Mask R-CNN and Retina U-Net as well as a radiologist.