Search Results for author: Michael I. Miller

Found 8 papers, 1 papers with code

Preserving Derivative Information while Transforming Neuronal Curves

no code implementations16 Mar 2023 Thomas L. Athey, Daniel J. Tward, Ulrich Mueller, Laurent Younes, Joshua T. Vogelstein, Michael I. Miller

Then, the traces are mapped to common coordinate systems by transforming the positions of their points, which neglects how the transformation bends the line segments in between.

Hidden Markov Modeling for Maximum Likelihood Neuron Reconstruction

no code implementations4 Jun 2021 Thomas L. Athey, Daniel J. Tward, Ulrich Mueller, Joshua T. Vogelstein, Michael I. Miller

Our most probable estimation method models the task of reconstructing neuronal processes in the presence of other neurons, and thus is applicable in images with several neurons.

Semantic Segmentation

Deformably Registering and Annotating Whole CLARITY Brains to an Atlas via Masked LDDMM

1 code implementation6 May 2016 Kwame S. Kutten, Joshua T. Vogelstein, Nicolas Charon, Li Ye, Karl Deisseroth, Michael I. Miller

Therefore, we developed a method (Mask-LDDMM) for registering CLARITY images, that automatically find the brain boundary and learns the optimal deformation between the brain and atlas masks.

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