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Found 19 papers, 11 papers with code
SPM 25: open source neuroimaging analysis software
This paper reports the release of SPM 25. 01, a major new version of the software that incorporates novel analysis methods, optimisations of existing methods, as well as improved practices for open science and software development.
Automated Surgical Skill Assessment in Endoscopic Pituitary Surgery using Real-time Instrument Tracking on a High-fidelity Bench-top Phantom
This therefore demonstrates the feasibility of automated surgical skill assessment in simulated endoscopic pituitary surgery.
Large-kernel Attention for Efficient and Robust Brain Lesion Segmentation
Vision transformers are effective deep learning models for vision tasks, including medical image segmentation.
Biomedical image analysis competitions: The state of current participation practice
Of these, 84% were based on standard architectures.
Fitting Segmentation Networks on Varying Image Resolutions using Splatting
Data used in image segmentation are not always defined on the same grid.
Learn2Reg: comprehensive multi-task medical image registration challenge, dataset and evaluation in the era of deep learning
Image registration is a fundamental medical image analysis task, and a wide variety of approaches have been proposed.
Factorisation-based Image Labelling
Segmentation of brain magnetic resonance images (MRI) into anatomical regions is a useful task in neuroimaging.
Correcting inter-scan motion artefacts in quantitative R1 mapping at 7T
Conclusion: The proposed methods simplify inter-scan motion correction of $R_1$ maps and are applicable at both 3T and 7T, where a body coil is typically not available.
An MRF-UNet Product of Experts for Image Segmentation
While convolutional neural networks (CNNs) trained by back-propagation have seen unprecedented success at semantic segmentation tasks, they are known to struggle on out-of-distribution data.
Model-based multi-parameter mapping
Instead, we propose a probabilistic generative (forward) model of the entire dataset, which is formulated and inverted to jointly recover (log) parameter maps with a well-defined probabilistic interpretation (e. g., maximum likelihood or maximum a posteriori).
Flexible Bayesian Modelling for Nonlinear Image Registration
We describe a diffeomorphic registration algorithm that allows groups of images to be accurately aligned to a common space, which we intend to incorporate into the SPM software.
Joint Total Variation ESTATICS for Robust Multi-Parameter Mapping
Quantitative magnetic resonance imaging (qMRI) derives tissue-specific parameters -- such as the apparent transverse relaxation rate R2*, the longitudinal relaxation rate R1 and the magnetisation transfer saturation -- that can be compared across sites and scanners and carry important information about the underlying microstructure.
Groupwise Multimodal Image Registration using Joint Total Variation
In medical imaging it is common practice to acquire a wide range of modalities (MRI, CT, PET, etc.
A Tool for Super-Resolving Multimodal Clinical MRI
The model-driven nature of the approach means that no type of training is needed for applicability to the diversity of MR contrasts present in a clinical context.
Empirical Bayesian Mixture Models for Medical Image Translation
Automatically generating one medical imaging modality from another is known as medical image translation, and has numerous interesting applications.
Nonlinear Markov Random Fields Learned via Backpropagation
Although convolutional neural networks (CNNs) currently dominate competitions on image segmentation, for neuroimaging analysis tasks, more classical generative approaches based on mixture models are still used in practice to parcellate brains.
MRI Super-Resolution using Multi-Channel Total Variation
This paper presents a generative model for super-resolution in routine clinical magnetic resonance images (MRI), of arbitrary orientation and contrast.
An Algorithm for Learning Shape and Appearance Models without Annotations
This paper presents a framework for automatically learning shape and appearance models for medical (and certain other) images.
Diffeomorphic brain shape modelling using Gauss-Newton optimisation
Shape modelling describes methods aimed at capturing the natural variability of shapes and commonly relies on probabilistic interpretations of dimensionality reduction techniques such as principal component analysis.
