no code implementations • 29 May 2024 • Mareike Thies, Fabian Wagner, Noah Maul, Siyuan Mei, Mingxuan Gu, Laura Pfaff, Nastassia Vysotskaya, Haijun Yu, Andreas Maier
This study analyzes the influence of a spline-based motion model within an existing rigid motion compensation algorithm for cone-beam CT on the recoverable motion frequencies.
no code implementations • 23 Apr 2024 • Mareike Thies, Noah Maul, Siyuan Mei, Laura Pfaff, Nastassia Vysotskaya, Mingxuan Gu, Jonas Utz, Dennis Possart, Lukas Folle, Fabian Wagner, Andreas Maier
Motion artifacts can compromise the diagnostic value of computed tomography (CT) images.
no code implementations • 23 Apr 2024 • Siyuan Mei, Fuxin Fan, Mareike Thies, Mingxuan Gu, Fabian Wagner, Oliver Aust, Ina Erceg, Zeynab Mirzaei, Georgiana Neag, Yipeng Sun, Yixing Huang, Andreas Maier
Recently, X-ray microscopy (XRM) and light-sheet fluorescence microscopy (LSFM) have emerged as two pivotal imaging tools in preclinical research on bone remodeling diseases, offering micrometer-level resolution.
no code implementations • 4 Apr 2024 • Siyuan Mei, Fuxin Fan, Fabian Wagner, Mareike Thies, Mingxuan Gu, Yipeng Sun, Andreas Maier
Deep learning-based medical image processing algorithms require representative data during development.
1 code implementation • 15 Mar 2024 • Yipeng Sun, Yixing Huang, Linda-Sophie Schneider, Mareike Thies, Mingxuan Gu, Siyuan Mei, Siming Bayer, Andreas Maier
However, the choice of loss function profoundly affects the reconstructed images.
1 code implementation • 29 Jan 2024 • Yipeng Sun, Linda-Sophie Schneider, Fuxin Fan, Mareike Thies, Mingxuan Gu, Siyuan Mei, Yuzhong Zhou, Siming Bayer, Andreas Maier
In this study, we introduce a Fourier series-based trainable filter for computed tomography (CT) reconstruction within the filtered backprojection (FBP) framework.
no code implementations • 17 Jan 2024 • Mareike Thies, Fabian Wagner, Noah Maul, Haijun Yu, Manuela Meier, Linda-Sophie Schneider, Mingxuan Gu, Siyuan Mei, Lukas Folle, Andreas Maier
The analytic Jacobian for the backprojection operation, which is at the core of the proposed method, is made publicly available.
no code implementations • 3 Aug 2023 • Jonas Utz, Tobias Weise, Maja Schlereth, Fabian Wagner, Mareike Thies, Mingxuan Gu, Stefan Uderhardt, Katharina Breininger
We show that this increases coherence between generated images and cycled masks and evaluate synthetic datasets on a downstream nuclei segmentation task.
no code implementations • 1 Mar 2023 • Mareike Thies, Fabian Wagner, Mingxuan Gu, Siyuan Mei, Yixing Huang, Sabrina Pechmann, Oliver Aust, Daniela Weidner, Georgiana Neag, Stefan Uderhardt, Georg Schett, Silke Christiansen, Andreas Maier
Intravital X-ray microscopy (XRM) in preclinical mouse models is of vital importance for the identification of microscopic structural pathological changes in the bone which are characteristic of osteoporosis.
no code implementations • 9 Dec 2022 • Fabian Wagner, Mareike Thies, Laura Pfaff, Noah Maul, Sabrina Pechmann, Mingxuan Gu, Jonas Utz, Oliver Aust, Daniela Weidner, Georgiana Neag, Stefan Uderhardt, Jang-Hwan Choi, Andreas Maier
We stack denoising with domain-transfer operators to utilize the independent noise realizations of different image contrasts to derive a self-supervised loss.
1 code implementation • 5 Dec 2022 • Mareike Thies, Fabian Wagner, Noah Maul, Lukas Folle, Manuela Meier, Maximilian Rohleder, Linda-Sophie Schneider, Laura Pfaff, Mingxuan Gu, Jonas Utz, Felix Denzinger, Michael Manhart, Andreas Maier
The cost function is parameterized by a trained neural network which regresses an image quality metric from the motion affected reconstruction alone.
1 code implementation • 2 Nov 2022 • Fabian Wagner, Mareike Thies, Laura Pfaff, Oliver Aust, Sabrina Pechmann, Daniela Weidner, Noah Maul, Maximilian Rohleder, Mingxuan Gu, Jonas Utz, Felix Denzinger, Andreas Maier
In this work, we present an end-to-end trainable CT reconstruction pipeline that contains denoising operators in both the projection and the image domain and that are optimized simultaneously without requiring ground-truth high-dose CT data.
no code implementations • 15 Jul 2022 • Fabian Wagner, Mareike Thies, Felix Denzinger, Mingxuan Gu, Mayank Patwari, Stefan Ploner, Noah Maul, Laura Pfaff, Yixing Huang, Andreas Maier
Low-dose computed tomography (CT) denoising algorithms aim to enable reduced patient dose in routine CT acquisitions while maintaining high image quality.
no code implementations • 8 Jun 2022 • Mingxuan Gu, Sulaiman Vesal, Mareike Thies, Zhaoya Pan, Fabian Wagner, Mirabela Rusu, Andreas Maier, Ronak Kosti
Then, to align the source and target features and tackle the memory issue of the traditional contrastive loss, we propose the centroid-based contrastive learning (CCL) and a centroid norm regularizer (CNR) to optimize the contrastive pairs in both direction and magnitude.
1 code implementation • 28 Jan 2022 • Mingxuan Gu, Sulaiman Vesal, Ronak Kosti, Andreas Maier
This restricts the development of UDA methods for new domains.
1 code implementation • 25 Jan 2022 • Fabian Wagner, Mareike Thies, Mingxuan Gu, Yixing Huang, Sabrina Pechmann, Mayank Patwari, Stefan Ploner, Oliver Aust, Stefan Uderhardt, Georg Schett, Silke Christiansen, Andreas Maier
Due to the extremely low number of trainable parameters with well-defined effect, prediction reliance and data integrity is guaranteed at any time in the proposed pipelines, in contrast to most other deep learning-based denoising architectures.
no code implementations • 19 Jan 2022 • Mareike Thies, Fabian Wagner, Mingxuan Gu, Lukas Folle, Lina Felsner, Andreas Maier
Learned iterative reconstruction algorithms for inverse problems offer the flexibility to combine analytical knowledge about the problem with modules learned from data.
1 code implementation • 15 Mar 2021 • Sulaiman Vesal, Mingxuan Gu, Ronak Kosti, Andreas Maier, Nishant Ravikumar
The proposed method is based on adversarial learning and adapts network features between source and target domain in different spaces.
1 code implementation • 24 Dec 2020 • Sulaiman Vesal, Mingxuan Gu, Andreas Maier, Nishant Ravikumar
In this paper, we propose a spatio-temporal multi-task learning approach to obtain a complete set of measurements quantifying cardiac LV morphology, regional-wall thickness (RWT), and additionally detecting the cardiac phase cycle (systole and diastole) for a given 3D Cine-magnetic resonance (MR) image sequence.