1 code implementation • 29 Nov 2024 • Tong Ding, Sophia J. Wagner, Andrew H. Song, Richard J. Chen, Ming Y. Lu, Andrew Zhang, Anurag J. Vaidya, Guillaume Jaume, Muhammad Shaban, Ahrong Kim, Drew F. K. Williamson, Bowen Chen, Cristina Almagro-Perez, Paul Doucet, Sharifa Sahai, Chengkuan Chen, Daisuke Komura, Akihiro Kawabe, Shumpei Ishikawa, Georg Gerber, Tingying Peng, Long Phi Le, Faisal Mahmood
The field of computational pathology has been transformed with recent advances in foundation models that encode histopathology region-of-interests (ROIs) into versatile and transferable feature representations via self-supervised learning (SSL).
1 code implementation • 29 Aug 2023 • Richard J. Chen, Tong Ding, Ming Y. Lu, Drew F. K. Williamson, Guillaume Jaume, Bowen Chen, Andrew Zhang, Daniel Shao, Andrew H. Song, Muhammad Shaban, Mane Williams, Anurag Vaidya, Sharifa Sahai, Lukas Oldenburg, Luca L. Weishaupt, Judy J. Wang, Walt Williams, Long Phi Le, Georg Gerber, Faisal Mahmood
Tissue phenotyping is a fundamental computational pathology (CPath) task in learning objective characterizations of histopathologic biomarkers in anatomic pathology.
1 code implementation • 4 Aug 2021 • Richard J. Chen, Ming Y. Lu, Drew F. K. Williamson, Tiffany Y. Chen, Jana Lipkova, Muhammad Shaban, Maha Shady, Mane Williams, Bumjin Joo, Zahra Noor, Faisal Mahmood
To validate that these model explanations are prognostic, we further analyzed high attention morphological regions in WSIs, which indicates that tumor-infiltrating lymphocyte presence corroborates with favorable cancer prognosis on 9 out of 14 cancer types studied.
1 code implementation • 27 Jul 2021 • Richard J. Chen, Ming Y. Lu, Muhammad Shaban, Chengkuan Chen, Tiffany Y. Chen, Drew F. K. Williamson, Faisal Mahmood
Cancer prognostication is a challenging task in computational pathology that requires context-aware representations of histology features to adequately infer patient survival.
no code implementations • 16 Apr 2021 • Muhammad Shaban, Shan E Ahmed Raza, Mariam Hassan, Arif Jamshed, Sajid Mushtaq, Asif Loya, Nikolaos Batis, Jill Brooks, Paul Nankivell, Neil Sharma, Max Robinson, Hisham Mehanna, Syed Ali Khurram, Nasir Rajpoot
In this study, our aim is to explore the prognostic significance of tumour-associated stroma infiltrating lymphocytes (TASILs) in head and neck squamous cell carcinoma (HNSCC) through an AI based automated method.
1 code implementation • 3 Sep 2019 • Yanning Zhou, Simon Graham, Navid Alemi Koohbanani, Muhammad Shaban, Pheng-Ann Heng, Nasir Rajpoot
Furthermore, to deal with redundancy in the graph, we propose a sampling technique that removes nodes in areas of dense nuclear activity.
no code implementations • 22 Jul 2019 • Muhammad Shaban, Ruqayya Awan, Muhammad Moazam Fraz, Ayesha Azam, David Snead, Nasir M. Rajpoot
Digital histology images are amenable to the application of convolutional neural network (CNN) for analysis due to the sheer size of pixel data present in them.
no code implementations • 31 Oct 2018 • Quoc Dang Vu, Simon Graham, Minh Nguyen Nhat To, Muhammad Shaban, Talha Qaiser, Navid Alemi Koohbanani, Syed Ali Khurram, Tahsin Kurc, Keyvan Farahani, Tianhao Zhao, Rajarsi Gupta, Jin Tae Kwak, Nasir Rajpoot, Joel Saltz
Segmentation of nuclei and classification of tissue images are two common tasks in tissue image analysis.
no code implementations • 22 Apr 2018 • Shan E Ahmed Raza, Linda Cheung, Muhammad Shaban, Simon Graham, David Epstein, Stella Pelengaris, Michael Khan, Nasir M. Rajpoot
Object segmentation and structure localization are important steps in automated image analysis pipelines for microscopy images.
Ranked #13 on Multi-tissue Nucleus Segmentation on Kumar
no code implementations • 12 Feb 2018 • Ruqayya Awan, Navid Alemi Koohbanani, Muhammad Shaban, Anna Lisowska, Nasir Rajpoot
Convolutional neural networks (CNNs) have been recently used for a variety of histology image analysis.
no code implementations • 27 Jul 2017 • Abhinav Agarwalla, Muhammad Shaban, Nasir M. Rajpoot
Convolutional Neural Network (CNN) models have become the state-of-the-art for most computer vision tasks with natural images.