1 code implementation • 11 Mar 2023 • Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Martin Weigert, Uwe Schmidt, Wenhua Zhang, Jun Zhang, Sen yang, Jinxi Xiang, Xiyue Wang, Josef Lorenz Rumberger, Elias Baumann, Peter Hirsch, Lihao Liu, Chenyang Hong, Angelica I. Aviles-Rivero, Ayushi Jain, Heeyoung Ahn, Yiyu Hong, Hussam Azzuni, Min Xu, Mohammad Yaqub, Marie-Claire Blache, Benoît Piégu, Bertrand Vernay, Tim Scherr, Moritz Böhland, Katharina Löffler, Jiachen Li, Weiqin Ying, Chixin Wang, Dagmar Kainmueller, Carola-Bibiane Schönlieb, Shuolin Liu, Dhairya Talsania, Yughender Meda, Prakash Mishra, Muhammad Ridzuan, Oliver Neumann, Marcel P. Schilling, Markus Reischl, Ralf Mikut, Banban Huang, Hsiang-Chin Chien, Ching-Ping Wang, Chia-Yen Lee, Hong-Kun Lin, Zaiyi Liu, Xipeng Pan, Chu Han, Jijun Cheng, Muhammad Dawood, Srijay Deshpande, Raja Muhammad Saad Bashir, Adam Shephard, Pedro Costa, João D. Nunes, Aurélio Campilho, Jaime S. Cardoso, Hrishikesh P S, Densen Puthussery, Devika R G, Jiji C V, Ye Zhang, Zijie Fang, Zhifan Lin, Yongbing Zhang, Chunhui Lin, Liukun Zhang, Lijian Mao, Min Wu, Vi Thi-Tuong Vo, Soo-Hyung Kim, Taebum Lee, Satoshi Kondo, Satoshi Kasai, Pranay Dumbhare, Vedant Phuse, Yash Dubey, Ankush Jamthikar, Trinh Thi Le Vuong, Jin Tae Kwak, Dorsa Ziaei, Hyun Jung, Tianyi Miao, David Snead, Shan E Ahmed Raza, Fayyaz Minhas, Nasir M. Rajpoot
Nuclear detection, segmentation and morphometric profiling are essential in helping us further understand the relationship between histology and patient outcome.
no code implementations • 19 Feb 2023 • Manahil Raza, Ruqayya Awan, Raja Muhammad Saad Bashir, Talha Qaiser, Nasir M. Rajpoot
The second component is a hard attention classification model, which further extracts a sequence of multi-resolution glimpses from each tile for classification.
no code implementations • 30 Jan 2023 • Raja Muhammad Saad Bashir, Talha Qaiser, Shan E Ahmed Raza, Nasir M. Rajpoot
The proposed method incorporates context-aware consistency by contrasting pairs of overlapping images in a pixel-wise manner from changing contexts resulting in robust and context invariant features.
no code implementations • 25 Nov 2021 • Gozde N. Gunesli, Mohsin Bilal, Shan E Ahmed Raza, Nasir M. Rajpoot
In this study, we propose FedDropoutAvg, a new federated learning approach for training a generalizable model.
no code implementations • 31 Aug 2021 • Adam J. Shephard, Simon Graham, R. M. Saad Bashir, Mostafa Jahanifar, Hanya Mahmood, Syed Ali Khurram, Nasir M. Rajpoot
Oral epithelial dysplasia (OED) is a pre-malignant histopathological diagnosis given to lesions of the oral cavity.
no code implementations • 23 Aug 2021 • Muhammad Dawood, Kim Branson, Nasir M. Rajpoot, Fayyaz ul Amir Afsar Minhas
"Is it possible to predict expression levels of different genes at a given spatial location in the routine histology image of a tumor section by modeling its stain absorption characteristics?"
no code implementations • 23 Aug 2021 • Fayyaz Minhas, Michael S. Toss, Noor ul Wahab, Emad Rakha, Nasir M. Rajpoot
Can we predict if an early stage cancer patient is at high risk of developing distant metastasis and what clinicopathological factors are associated with such a risk?
1 code implementation • 18 Aug 2021 • Muhammad Dawood, Kim Branson, Nasir M. Rajpoot, Fayyaz ul Amir Afsar Minhas
Cellular composition prediction, i. e., predicting the presence and counts of different types of cells in the tumor microenvironment from a digitized image of a Hematoxylin and Eosin (H&E) stained tissue section can be used for various tasks in computational pathology such as the analysis of cellular topology and interactions, subtype prediction, survival analysis, etc.
no code implementations • 11 Aug 2020 • R. M. Saad Bashir, Talha Qaiser, Shan E Ahmed Raza, Nasir M. Rajpoot
The model is trained in multi-task learning manner with noise tolerant joint loss for classification localization and achieves better performance when given limited data in contrast to a simple deep model.
no code implementations • 22 Jul 2019 • Muhammad Shaban, Ruqayya Awan, Muhammad Moazam Fraz, Ayesha Azam, David Snead, Nasir M. Rajpoot
Digital histology images are amenable to the application of convolutional neural network (CNN) for analysis due to the sheer size of pixel data present in them.
no code implementations • 26 Mar 2019 • Talha Qaiser, Nasir M. Rajpoot
Estimating over-amplification of human epidermal growth factor receptor 2 (HER2) on invasive breast cancer (BC) is regarded as a significant predictive and prognostic marker.
no code implementations • 22 Apr 2018 • Shan E Ahmed Raza, Linda Cheung, Muhammad Shaban, Simon Graham, David Epstein, Stella Pelengaris, Michael Khan, Nasir M. Rajpoot
Object segmentation and structure localization are important steps in automated image analysis pipelines for microscopy images.
Ranked #13 on Multi-tissue Nucleus Segmentation on Kumar
no code implementations • 27 Jul 2017 • Abhinav Agarwalla, Muhammad Shaban, Nasir M. Rajpoot
Convolutional Neural Network (CNN) models have become the state-of-the-art for most computer vision tasks with natural images.
no code implementations • 1 Mar 2016 • Korsuk Sirinukunwattana, Josien P. W. Pluim, Hao Chen, Xiaojuan Qi, Pheng-Ann Heng, Yun Bo Guo, Li Yang Wang, Bogdan J. Matuszewski, Elia Bruni, Urko Sanchez, Anton Böhm, Olaf Ronneberger, Bassem Ben Cheikh, Daniel Racoceanu, Philipp Kainz, Michael Pfeiffer, Martin Urschler, David R. J. Snead, Nasir M. Rajpoot
Colorectal adenocarcinoma originating in intestinal glandular structures is the most common form of colon cancer.
no code implementations • 21 Nov 2014 • Mitko Veta, Paul J. van Diest, Stefan M. Willems, Haibo Wang, Anant Madabhushi, Angel Cruz-Roa, Fabio Gonzalez, Anders B. L. Larsen, Jacob S. Vestergaard, Anders B. Dahl, Dan C. Cireşan, Jürgen Schmidhuber, Alessandro Giusti, Luca M. Gambardella, F. Boray Tek, Thomas Walter, Ching-Wei Wang, Satoshi Kondo, Bogdan J. Matuszewski, Frederic Precioso, Violet Snell, Josef Kittler, Teofilo E. de Campos, Adnan M. Khan, Nasir M. Rajpoot, Evdokia Arkoumani, Miangela M. Lacle, Max A. Viergever, Josien P. W. Pluim
The proliferative activity of breast tumors, which is routinely estimated by counting of mitotic figures in hematoxylin and eosin stained histology sections, is considered to be one of the most important prognostic markers.