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Found 22 papers, 4 papers with code
Learning Sequential Information in Task-based fMRI for Synthetic Data Augmentation
Insufficiency of training data is a persistent issue in medical image analysis, especially for task-based functional magnetic resonance images (fMRI) with spatio-temporal imaging data acquired using specific cognitive tasks.
TAI-GAN: Temporally and Anatomically Informed GAN for early-to-late frame conversion in dynamic cardiac PET motion correction
The rapid tracer kinetics of rubidium-82 ($^{82}$Rb) and high variation of cross-frame distribution in dynamic cardiac positron emission tomography (PET) raise significant challenges for inter-frame motion correction, particularly for the early frames where conventional intensity-based image registration techniques are not applicable.
Copy Number Variation Informs fMRI-based Prediction of Autism Spectrum Disorder
We demonstrate that our attention-based model combining genetic information, demographic data, and functional magnetic resonance imaging results in superior prediction performance compared to other multimodal approaches.
Unsupervised inter-frame motion correction for whole-body dynamic PET using convolutional long short-term memory in a convolutional neural network
The motion estimation network is a convolutional neural network with a combined convolutional long short-term memory layer, fully utilizing dynamic temporal features and spatial information.
Early Disease Stage Characterization in Parkinson's Disease from Resting-state fMRI Data Using a Long Short-term Memory Network
Parkinson's disease (PD) is a common and complex neurodegenerative disorder with 5 stages in the Hoehn and Yahr scaling.
A Metamodel Structure For Regression Analysis: Application To Prediction Of Autism Spectrum Disorder Severity
Traditional regression models do not generalize well when learning from small and noisy datasets.
Estimating Reproducible Functional Networks Associated with Task Dynamics using Unsupervised LSTMs
We demonstrate that the functional networks learned by the LSTM model are more strongly associated with the task activity and dynamics compared to other approaches.
Demographic-Guided Attention in Recurrent Neural Networks for Modeling Neuropathophysiological Heterogeneity
Heterogeneous presentation of a neurological disorder suggests potential differences in the underlying pathophysiological changes that occur in the brain.
MALI: A memory efficient and reverse accurate integrator for Neural ODEs
Neural ordinary differential equations (Neural ODEs) are a new family of deep-learning models with continuous depth.
Ranked #19 on
Image Generation
on ImageNet 64x64
(Bits per dim metric)
Pooling Regularized Graph Neural Network for fMRI Biomarker Analysis
We propose an interpretable GNN framework with a novel salient region selection mechanism to determine neurological brain biomarkers associated with disorders.
Neuropsychiatric Disease Classification Using Functional Connectomics -- Results of the Connectomics in NeuroImaging Transfer Learning Challenge
A second set of 100 subjects (50 neurotypical controls, 25 ADHD, and 25 ASD with ADHD comorbidity) was used for testing.
Hepatocellular Carcinoma Intra-arterial Treatment Response Prediction for Improved Therapeutic Decision-Making
This work proposes a pipeline to predict treatment response to intra-arterial therapy of patients with Hepatocellular Carcinoma (HCC) for improved therapeutic decision-making.
Jointly Discriminative and Generative Recurrent Neural Networks for Learning from fMRI
The addition of the generative model constrains the network to learn functional communities represented by the LSTM nodes that are both consistent with the data generation as well as useful for the classification task.
Decision Explanation and Feature Importance for Invertible Networks
We can determine the decision boundary of a linear classifier in the feature space; since the transform is invertible, we can invert the decision boundary from the feature space to the input space.
Domain-Agnostic Learning with Anatomy-Consistent Embedding for Cross-Modality Liver Segmentation
For the DA task, our DALACE model outperformed CycleGAN, TD-GAN , and DADR with DSC of 0. 847 compared to 0. 721, 0. 793 and 0. 806.
Graph Embedding Using Infomax for ASD Classification and Brain Functional Difference Detection
Here, we model the whole brain fMRI as a graph, which preserves geometrical and temporal information and use a Graph Neural Network (GNN) to learn from the graph-structured fMRI data.
Unsupervised Domain Adaptation via Disentangled Representations: Application to Cross-Modality Liver Segmentation
First, images from each domain are embedded into two spaces, a shared domain-invariant content space and a domain-specific style space.
Invertible Network for Classification and Biomarker Selection for ASD
Recently deep learning methods have achieved success in the classification task of ASD using fMRI data.
Graph Neural Network for Interpreting Task-fMRI Biomarkers
Our pipeline can be generalized to other graph feature importance interpretation problems.
Efficient Interpretation of Deep Learning Models Using Graph Structure and Cooperative Game Theory: Application to ASD Biomarker Discovery
Cooperative game theory is advantageous here because it directly considers the interaction between features and can be applied to any machine learning method, making it a novel, more accurate way of determining instance-wise biomarker importance from deep learning models.
Brain Biomarker Interpretation in ASD Using Deep Learning and fMRI
Therefore, in this work, we address the problem of interpreting reliable biomarkers associated with identifying ASD; specifically, we propose a 2-stage method that classifies ASD and control subjects using fMRI images and interprets the saliency features activated by the classifier.
Prediction of Autism Treatment Response from Baseline fMRI using Random Forests and Tree Bagging
We propose predicting patient response to PRT from baseline task-based fMRI by the novel application of a random forest and tree bagging strategy.
