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Found 27 papers, 12 papers with code
No Fair Lunch: A Causal Perspective on Dataset Bias in Machine Learning for Medical Imaging
As machine learning methods gain prominence within clinical decision-making, addressing fairness concerns becomes increasingly urgent.
Region-based Contrastive Pretraining for Medical Image Retrieval with Anatomic Query
We introduce a novel Region-based contrastive pretraining for Medical Image Retrieval (RegionMIR) that demonstrates the feasibility of medical image retrieval with similar anatomical regions.
Compositional Zero-Shot Domain Transfer with Text-to-Text Models
We evaluate DoT5 on the biomedical domain and the resource-lean subdomain of radiology, focusing on NLI, text summarisation and embedding learning.
Learning to Exploit Temporal Structure for Biomedical Vision-Language Processing
Prior work in biomedical VLP has mostly relied on the alignment of single image and report pairs even though clinical notes commonly refer to prior images.
Making the Most of Text Semantics to Improve Biomedical Vision--Language Processing
We release a new dataset with locally-aligned phrase grounding annotations by radiologists to facilitate the study of complex semantic modelling in biomedical vision--language processing.
Active label cleaning for improved dataset quality under resource constraints
Imperfections in data annotation, known as label noise, are detrimental to the training of machine learning models and have an often-overlooked confounding effect on the assessment of model performance.
Hierarchical Analysis of Visual COVID-19 Features from Chest Radiographs
Chest radiography has been a recommended procedure for patient triaging and resource management in intensive care units (ICUs) throughout the COVID-19 pandemic.
Image-and-Spatial Transformer Networks for Structure-Guided Image Registration
The goal is to learn a complex function that maps the appearance of input image pairs to parameters of a spatial transformation in order to align corresponding anatomical structures.
Explainable Anatomical Shape Analysis through Deep Hierarchical Generative Models
At the highest level of this hierarchy, a two-dimensional latent space is simultaneously optimised to discriminate distinct clinical conditions, enabling the direct visualisation of the classification space.
Automated Quality Control in Image Segmentation: Application to the UK Biobank Cardiac MR Imaging Study
Methods: To overcome this challenge, we explore an approach for predicting segmentation quality based on Reverse Classification Accuracy, which enables us to discriminate between successful and failed segmentations on a per-cases basis.
Weakly Supervised Estimation of Shadow Confidence Maps in Fetal Ultrasound Imaging
Our method is more consistent than human annotation, and outperforms the state-of-the-art quantitatively in shadow segmentation and qualitatively in confidence estimation of shadow regions.
Image Classification
Shadow Confidence Maps In Ultrasound Imaging
A Comprehensive Approach for Learning-based Fully-Automated Inter-slice Motion Correction for Short-Axis Cine Cardiac MR Image Stacks
If long axis (LA) images are available, PSMs are generated for them and combined to create the target PSM; if not, the target PSM is produced from the same stack using a 3D model trained from motion-free stacks.
Attention Gated Networks: Learning to Leverage Salient Regions in Medical Images
AGs can be easily integrated into standard CNN models such as VGG or U-Net architectures with minimal computational overhead while increasing the model sensitivity and prediction accuracy.
Recurrent neural networks for aortic image sequence segmentation with sparse annotations
In this work, we propose an image sequence segmentation algorithm by combining a fully convolutional network with a recurrent neural network, which incorporates both spatial and temporal information into the segmentation task.
Learning Interpretable Anatomical Features Through Deep Generative Models: Application to Cardiac Remodeling
However, current approaches to the diagnosis of cardiovascular diseases often rely on subjective human assessment as well as manual analysis of medical images.
Adversarial and Perceptual Refinement for Compressed Sensing MRI Reconstruction
In addition, we introduce a semantic interpretability score, measuring the visibility of the region of interest in both ground truth and reconstructed images, which allows us to objectively quantify the usefulness of the image quality for image post-processing and analysis.
Real-time Prediction of Segmentation Quality
Recent advances in deep learning based image segmentation methods have enabled real-time performance with human-level accuracy.
Automatic View Planning with Multi-scale Deep Reinforcement Learning Agents
Navigating through target anatomy to find the required view plane is tedious and operator-dependent.
Attention-Gated Networks for Improving Ultrasound Scan Plane Detection
We show that, when the base network has a high capacity, the incorporated attention mechanism can provide efficient object localisation while improving the overall performance.
Attention U-Net: Learning Where to Look for the Pancreas
We propose a novel attention gate (AG) model for medical imaging that automatically learns to focus on target structures of varying shapes and sizes.
Ranked #1 on
Pancreas Segmentation
on CT-150
Learning-Based Quality Control for Cardiac MR Images
The results show the capability of the proposed pipeline to correctly detect incomplete or corrupted scans (e. g. on UK Biobank, sensitivity and specificity respectively 88% and 99% for heart coverage estimation, 85% and 95% for motion detection), allowing their exclusion from the analysed dataset or the triggering of a new acquisition.
TernaryNet: Faster Deep Model Inference without GPUs for Medical 3D Segmentation using Sparse and Binary Convolutions
We propose a new scheme that approximates both trainable weights and neural activations in deep networks by ternary values and tackles the open question of backpropagation when dealing with non-differentiable functions.
Automated cardiovascular magnetic resonance image analysis with fully convolutional networks
By combining FCN with a large-scale annotated dataset, the proposed automated method achieves a high performance on par with human experts in segmenting the LV and RV on short-axis CMR images and the left atrium (LA) and right atrium (RA) on long-axis CMR images.
Anatomically Constrained Neural Networks (ACNN): Application to Cardiac Image Enhancement and Segmentation
However, in most recent and promising techniques such as CNN based segmentation it is not obvious how to incorporate such prior knowledge.
Context-Sensitive Super-Resolution for Fast Fetal Magnetic Resonance Imaging
Fast imaging is required for targets that move to avoid motion artefacts.
Learning under Distributed Weak Supervision
The availability of training data for supervision is a frequently encountered bottleneck of medical image analysis methods.
DeepCut: Object Segmentation from Bounding Box Annotations using Convolutional Neural Networks
In this paper, we propose DeepCut, a method to obtain pixelwise object segmentations given an image dataset labelled with bounding box annotations.
