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Found 8 papers, 6 papers with code
FISBe: A Real-World Benchmark Dataset for Instance Segmentation of Long-Range Thin Filamentous Structures
Lastly we provide three baselines to kick off a competition that we envision to both advance the field of machine learning regarding methodology for capturing long-range data dependencies and facilitate scientific discovery in basic neuroscience.
CoNIC Challenge: Pushing the Frontiers of Nuclear Detection, Segmentation, Classification and Counting
Nuclear detection, segmentation and morphometric profiling are essential in helping us further understand the relationship between histology and patient outcome.
Tracking by weakly-supervised learning and graph optimization for whole-embryo C. elegans lineages
Our work specifically addresses the following challenging properties of C. elegans embryo recordings: (1) Many cell divisions as compared to benchmark recordings of other organisms, and (2) the presence of polar bodies that are easily mistaken as cell nuclei.
Panoptic segmentation with highly imbalanced semantic labels
We describe here the panoptic segmentation method we devised for our participation in the CoNIC: Colon Nuclei Identification and Counting Challenge at ISBI 2022.
Common Limitations of Image Processing Metrics: A Picture Story
While the importance of automatic image analysis is continuously increasing, recent meta-research revealed major flaws with respect to algorithm validation.
How Shift Equivariance Impacts Metric Learning for Instance Segmentation
In our work, we contribute a comprehensive formal analysis of the shift equivariance properties of encoder-decoder-style CNNs, which yields a clear picture of what can and cannot be achieved with metric learning in the face of same-looking objects.
An Auxiliary Task for Learning Nuclei Segmentation in 3D Microscopy Images
Learning-based methods trained on pixel-wise ground-truth segmentations have been shown to yield state-of-the-art results on 2d benchmark image data of nuclei, yet a respective benchmark is missing for 3d image data.
PatchPerPix for Instance Segmentation
We present a novel method for proposal free instance segmentation that can handle sophisticated object shapes which span large parts of an image and form dense object clusters with crossovers.
