no code implementations • 12 Jul 2024 • Chinedu Innocent Nwoye, Rupak Bose, Kareem Elgohary, Lorenzo Arboit, Giorgio Carlino, Joël L. Lavanchy, Pietro Mascagni, Nicolas Padoy
Human expert survey shows that participants were highly challenged by the realistic characteristics of the generated samples, demonstrating Surgical Imagen's effectiveness as a practical alternative to real data collection.
no code implementations • 9 Jul 2024 • Aditya Murali, Pietro Mascagni, Didier Mutter, Nicolas Padoy
The recently introduced Segment-Anything Model (SAM) has the potential to greatly accelerate the development of segmentation models.
1 code implementation • 11 Mar 2024 • Siddhant Satyanaik, Aditya Murali, Deepak Alapatt, Xin Wang, Pietro Mascagni, Nicolas Padoy
Purpose: Advances in deep learning have resulted in effective models for surgical video analysis; however, these models often fail to generalize across medical centers due to domain shift caused by variations in surgical workflow, camera setups, and patient demographics.
1 code implementation • 19 Dec 2023 • Aditya Murali, Deepak Alapatt, Pietro Mascagni, Armine Vardazaryan, Alain Garcia, Nariaki Okamoto, Guido Costamagna, Didier Mutter, Jacques Marescaux, Bernard Dallemagne, Nicolas Padoy
This technical report provides a detailed overview of Endoscapes, a dataset of laparoscopic cholecystectomy (LC) videos with highly intricate annotations targeted at automated assessment of the Critical View of Safety (CVS).
no code implementations • 14 Dec 2023 • Jean-Paul Mazellier, Antoine Boujon, Méline Bour-Lang, Maël Erharhd, Julien Waechter, Emilie Wernert, Pietro Mascagni, Nicolas Padoy
This technical report presents MOSaiC 3. 6. 2, a web-based collaborative platform designed for the annotation and evaluation of medical videos.
1 code implementation • 11 Dec 2023 • Aditya Murali, Deepak Alapatt, Pietro Mascagni, Armine Vardazaryan, Alain Garcia, Nariaki Okamoto, Didier Mutter, Nicolas Padoy
Recently, spatiotemporal graphs have emerged as a concise and elegant manner of representing video clips in an object-centric fashion, and have shown to be useful for downstream tasks such as action recognition.
no code implementations • 10 Dec 2023 • Deepak Alapatt, Aditya Murali, Vinkle Srivastav, Pietro Mascagni, AI4SafeChole Consortium, Nicolas Padoy
Methods: In this work, we employ self-supervised learning to flexibly leverage diverse surgical datasets, thereby learning taskagnostic representations that can be used for various surgical downstream tasks.
1 code implementation • 27 Jul 2023 • Kun Yuan, Vinkle Srivastav, Tong Yu, Joel L. Lavanchy, Pietro Mascagni, Nassir Navab, Nicolas Padoy
We demonstrate the representational capability of this space through several vision-and-language surgical tasks and vision-only tasks specific to surgery.
no code implementations • 21 Feb 2023 • Sanat Ramesh, Diego Dall'Alba, Cristians Gonzalez, Tong Yu, Pietro Mascagni, Didier Mutter, Jacques Marescaux, Paolo Fiorini, Nicolas Padoy
In this work, we propose to use coarser and easier-to-annotate activity labels, namely phases, as weak supervision to learn step recognition with fewer step annotated videos.
2 code implementations • 13 Feb 2023 • Chinedu Innocent Nwoye, Tong Yu, Saurav Sharma, Aditya Murali, Deepak Alapatt, Armine Vardazaryan, Kun Yuan, Jonas Hajek, Wolfgang Reiter, Amine Yamlahi, Finn-Henri Smidt, Xiaoyang Zou, Guoyan Zheng, Bruno Oliveira, Helena R. Torres, Satoshi Kondo, Satoshi Kasai, Felix Holm, Ege Özsoy, Shuangchun Gui, Han Li, Sista Raviteja, Rachana Sathish, Pranav Poudel, Binod Bhattarai, Ziheng Wang, Guo Rui, Melanie Schellenberg, João L. Vilaça, Tobias Czempiel, Zhenkun Wang, Debdoot Sheet, Shrawan Kumar Thapa, Max Berniker, Patrick Godau, Pedro Morais, Sudarshan Regmi, Thuy Nuong Tran, Jaime Fonseca, Jan-Hinrich Nölke, Estevão Lima, Eduard Vazquez, Lena Maier-Hein, Nassir Navab, Pietro Mascagni, Barbara Seeliger, Cristians Gonzalez, Didier Mutter, Nicolas Padoy
This paper presents the CholecTriplet2022 challenge, which extends surgical action triplet modeling from recognition to detection.
Ranked #1 on Action Triplet Detection on CholecT50 (Challenge)
no code implementations • 17 Jan 2023 • Joël L. Lavanchy, Armine Vardazaryan, Pietro Mascagni, AI4SafeChole Consortium, Didier Mutter, Nicolas Padoy
Results: The internal dataset consisting of 356, 267 images from 48 videos and the two multicentric test datasets consisting of 54, 385 and 58, 349 images from 10 and 20 videos, respectively, were annotated.
no code implementations • 13 Dec 2022 • Pietro Mascagni, Deepak Alapatt, Alfonso Lapergola, Armine Vardazaryan, Jean-Paul Mazellier, Bernard Dallemagne, Didier Mutter, Nicolas Padoy
Artificial intelligence is set to be deployed in operating rooms to improve surgical care.
1 code implementation • 8 Dec 2022 • Aditya Murali, Deepak Alapatt, Pietro Mascagni, Armine Vardazaryan, Alain Garcia, Nariaki Okamoto, Didier Mutter, Nicolas Padoy
Assessing the critical view of safety in laparoscopic cholecystectomy requires accurate identification and localization of key anatomical structures, reasoning about their geometric relationships to one another, and determining the quality of their exposure.
6 code implementations • 10 Apr 2022 • Chinedu Innocent Nwoye, Deepak Alapatt, Tong Yu, Armine Vardazaryan, Fangfang Xia, Zixuan Zhao, Tong Xia, Fucang Jia, Yuxuan Yang, Hao Wang, Derong Yu, Guoyan Zheng, Xiaotian Duan, Neil Getty, Ricardo Sanchez-Matilla, Maria Robu, Li Zhang, Huabin Chen, Jiacheng Wang, Liansheng Wang, Bokai Zhang, Beerend Gerats, Sista Raviteja, Rachana Sathish, Rong Tao, Satoshi Kondo, Winnie Pang, Hongliang Ren, Julian Ronald Abbing, Mohammad Hasan Sarhan, Sebastian Bodenstedt, Nithya Bhasker, Bruno Oliveira, Helena R. Torres, Li Ling, Finn Gaida, Tobias Czempiel, João L. Vilaça, Pedro Morais, Jaime Fonseca, Ruby Mae Egging, Inge Nicole Wijma, Chen Qian, GuiBin Bian, Zhen Li, Velmurugan Balasubramanian, Debdoot Sheet, Imanol Luengo, Yuanbo Zhu, Shuai Ding, Jakob-Anton Aschenbrenner, Nicolas Elini van der Kar, Mengya Xu, Mobarakol Islam, Lalithkumar Seenivasan, Alexander Jenke, Danail Stoyanov, Didier Mutter, Pietro Mascagni, Barbara Seeliger, Cristians Gonzalez, Nicolas Padoy
In this paper, we present the challenge setup and assessment of the state-of-the-art deep learning methods proposed by the participants during the challenge.
Ranked #1 on Action Triplet Recognition on CholecT50 (Challenge) (using extra training data)
no code implementations • 14 Mar 2022 • Hasan Kassem, Deepak Alapatt, Pietro Mascagni, AI4SafeChole Consortium, Alexandros Karargyris, Nicolas Padoy
With these constraints in mind, we propose FedCy, a federated semi-supervised learning (FSSL) method that combines FL and self-supervised learning to exploit a decentralized dataset of both labeled and unlabeled videos, thereby improving performance on the task of surgical phase recognition.
no code implementations • 8 Mar 2022 • Tong Yu, Pietro Mascagni, Juan Verde, Jacques Marescaux, Didier Mutter, Nicolas Padoy
Searching through large volumes of medical data to retrieve relevant information is a challenging yet crucial task for clinical care.
no code implementations • 27 Dec 2021 • Deepak Alapatt, Pietro Mascagni, Armine Vardazaryan, Alain Garcia, Nariaki Okamoto, Didier Mutter, Jacques Marescaux, Guido Costamagna, Bernard Dallemagne, Nicolas Padoy
A major obstacle to building models for effective semantic segmentation, and particularly video semantic segmentation, is a lack of large and well annotated datasets.
Ranked #2 on Semantic Segmentation on Endoscapes
1 code implementation • 29 Sep 2021 • Alexandros Karargyris, Renato Umeton, Micah J. Sheller, Alejandro Aristizabal, Johnu George, Srini Bala, Daniel J. Beutel, Victor Bittorf, Akshay Chaudhari, Alexander Chowdhury, Cody Coleman, Bala Desinghu, Gregory Diamos, Debo Dutta, Diane Feddema, Grigori Fursin, Junyi Guo, Xinyuan Huang, David Kanter, Satyananda Kashyap, Nicholas Lane, Indranil Mallick, Pietro Mascagni, Virendra Mehta, Vivek Natarajan, Nikola Nikolov, Nicolas Padoy, Gennady Pekhimenko, Vijay Janapa Reddi, G Anthony Reina, Pablo Ribalta, Jacob Rosenthal, Abhishek Singh, Jayaraman J. Thiagarajan, Anna Wuest, Maria Xenochristou, Daguang Xu, Poonam Yadav, Michael Rosenthal, Massimo Loda, Jason M. Johnson, Peter Mattson
Medical AI has tremendous potential to advance healthcare by supporting the evidence-based practice of medicine, personalizing patient treatment, reducing costs, and improving provider and patient experience.
8 code implementations • 7 Sep 2021 • Chinedu Innocent Nwoye, Tong Yu, Cristians Gonzalez, Barbara Seeliger, Pietro Mascagni, Didier Mutter, Jacques Marescaux, Nicolas Padoy
To achieve this task, we introduce our new model, the Rendezvous (RDV), which recognizes triplets directly from surgical videos by leveraging attention at two different levels.
Ranked #1 on Action Triplet Recognition on CholecT50
1 code implementation • 21 Jun 2021 • Pietro Mascagni, Deepak Alapatt, Alain Garcia, Nariaki Okamoto, Armine Vardazaryan, Guido Costamagna, Bernard Dallemagne, Nicolas Padoy
Minimally invasive image-guided surgery heavily relies on vision.
no code implementations • 6 Apr 2021 • Pietro Mascagni, Maria Rita Rodriguez-Luna, Takeshi Urade, Emanuele Felli, Patrick Pessaux, Didier Mutter, Jacques Marescaux, Guido Costamagna, Bernard Dallemagne, Nicolas Padoy
The primary endpoint was to compare the rate of CVS achievement between LCs performed in the year before and the year after the 5-second rule.
no code implementations • 24 Feb 2021 • Sanat Ramesh, Diego Dall'Alba, Cristians Gonzalez, Tong Yu, Pietro Mascagni, Didier Mutter, Jacques Marescaux, Paolo Fiorini, Nicolas Padoy
Conclusion: In this work, we present a multi-task multi-stage temporal convolutional network for surgical activity recognition, which shows improved results compared to single-task models on the Bypass40 gastric bypass dataset with multi-level annotations.
no code implementations • 30 Oct 2020 • Lena Maier-Hein, Matthias Eisenmann, Duygu Sarikaya, Keno März, Toby Collins, Anand Malpani, Johannes Fallert, Hubertus Feussner, Stamatia Giannarou, Pietro Mascagni, Hirenkumar Nakawala, Adrian Park, Carla Pugh, Danail Stoyanov, Swaroop S. Vedula, Kevin Cleary, Gabor Fichtinger, Germain Forestier, Bernard Gibaud, Teodor Grantcharov, Makoto Hashizume, Doreen Heckmann-Nötzel, Hannes G. Kenngott, Ron Kikinis, Lars Mündermann, Nassir Navab, Sinan Onogur, Raphael Sznitman, Russell H. Taylor, Minu D. Tizabi, Martin Wagner, Gregory D. Hager, Thomas Neumuth, Nicolas Padoy, Justin Collins, Ines Gockel, Jan Goedeke, Daniel A. Hashimoto, Luc Joyeux, Kyle Lam, Daniel R. Leff, Amin Madani, Hani J. Marcus, Ozanan Meireles, Alexander Seitel, Dogu Teber, Frank Ückert, Beat P. Müller-Stich, Pierre Jannin, Stefanie Speidel
We further complement this technical perspective with (4) a review of currently available SDS products and the translational progress from academia and (5) a roadmap for faster clinical translation and exploitation of the full potential of SDS, based on an international multi-round Delphi process.
1 code implementation • 28 Sep 2020 • Deepak Alapatt, Pietro Mascagni, Vinkle Srivastav, Nicolas Padoy
Deep neural networks power most recent successes of artificial intelligence, spanning from self-driving cars to computer aided diagnosis in radiology and pathology.
4 code implementations • 10 Jul 2020 • Chinedu Innocent Nwoye, Cristians Gonzalez, Tong Yu, Pietro Mascagni, Didier Mutter, Jacques Marescaux, Nicolas Padoy
Recognition of surgical activity is an essential component to develop context-aware decision support for the operating room.
Ranked #1 on Action Triplet Recognition on CholecT40