no code implementations • 11 Dec 2023 • Negin Ghamsarian, Yosuf El-Shabrawi, Sahar Nasirihaghighi, Doris Putzgruber-Adamitsch, Martin Zinkernagel, Sebastian Wolf, Klaus Schoeffmann, Raphael Sznitman
Besides, we initiate the research on domain adaptation for instrument segmentation in cataract surgery by evaluating cross-domain instrument segmentation performance in cataract surgery videos.
no code implementations • 6 Dec 2023 • Negin Ghamsarian, Doris Putzgruber-Adamitsch, Stephanie Sarny, Raphael Sznitman, Klaus Schoeffmann, Yosuf El-Shabrawi
The Pearson correlation and t-test results reveal significant correlations between lens unfolding delay and lens rotation and significant differences between the intra-operative rotations stability of four groups of lenses.
no code implementations • 6 Dec 2023 • Negin Ghamsarian, Sebastian Wolf, Martin Zinkernagel, Klaus Schoeffmann, Raphael Sznitman
We propose a network architecture, DeepPyramid+, which addresses diverse challenges encountered in medical image and surgical video segmentation.
no code implementations • 15 Nov 2023 • Fei Wu, Pablo Marquez-Neila, Mingyi Zheng, Hedyeh Rafii-Tari, Raphael Sznitman
Active Learning (AL) is a popular approach that can help to reduce this burden by iteratively selecting images for annotation to improve the model performance.
no code implementations • 7 Nov 2023 • Christopher Hahne, Georges Chabouh, Olivier Couture, Raphael Sznitman
Ultrasound Localization Microscopy (ULM) enables imaging of vascular structures in the micrometer range by accumulating contrast agent particle locations over time.
1 code implementation • 2 Oct 2023 • Christopher Hahne, Georges Chabouh, Arthur Chavignon, Olivier Couture, Raphael Sznitman
However, our study uncovers an enormous potential: The process of delay-and-sum beamforming leads to an irreversible reduction of Radio-Frequency (RF) channel data, while its implications for localization remain largely unexplored.
1 code implementation • 25 Aug 2023 • Lars Doorenbos, Pablo Márquez-Neila, Raphael Sznitman, Pascal Mettes
To make hyperbolic random forests work on multi-class data and imbalanced experiments, we furthermore outline a new method for combining classes based on their lowest common ancestor and a class-balanced version of the large-margin loss.
1 code implementation • 23 Aug 2023 • Christopher Hahne, Michel Hayoz, Raphael Sznitman
Time of Flight (ToF) is a prevalent depth sensing technology in the fields of robotics, medical imaging, and non-destructive testing.
1 code implementation • 31 Jul 2023 • Negin Ghamsarian, Javier Gamazo Tejero, Pablo Márquez Neila, Sebastian Wolf, Martin Zinkernagel, Klaus Schoeffmann, Raphael Sznitman
However, the unreliability of pseudo labels can hinder the capability of self-training techniques to induce abstract representation from the unlabeled target dataset, especially in the case of large distribution gaps.
no code implementations • 19 Jul 2023 • Tatiana Fountoukidou, Raphael Sznitman
As such, validation of machine learning models represents an important aspect and yet, most methods are only validated in a limited way.
1 code implementation • 3 Jul 2023 • Sergio Tascon-Morales, Pablo Márquez-Neila, Raphael Sznitman
Our code and data are available at https://github. com/sergiotasconmorales/locvqa.
no code implementations • 27 Jun 2023 • Christopher Hahne, Raphael Sznitman
Contrast-Enhanced Ultra-Sound (CEUS) has become a viable method for non-invasive, dynamic visualization in medical diagnostics, yet Ultrasound Localization Microscopy (ULM) has enabled a revolutionary breakthrough by offering ten times higher resolution.
2 code implementations • 17 Apr 2023 • Michel Hayoz, Christopher Hahne, Mathias Gallardo, Daniel Candinas, Thomas Kurmann, Maximilian Allan, Raphael Sznitman
Purpose: Surgical scene understanding plays a critical role in the technology stack of tomorrow's intervention-assisting systems in endoscopic surgeries.
1 code implementation • 11 Apr 2023 • Alain Jungo, Lars Doorenbos, Tommaso Da Col, Maarten Beelen, Martin Zinkernagel, Pablo Márquez-Neila, Raphael Sznitman
Detecting so-called out-of-distribution (OoD) samples is crucial in safety-critical applications such as robotically guided retinal microsurgery, where distances between the instrument and the retina are derived from sequences of 1D images that are acquired by an instrument-integrated optical coherence tomography (iiOCT) probe.
no code implementations • CVPR 2023 • Javier Gamazo Tejero, Martin S. Zinkernagel, Sebastian Wolf, Raphael Sznitman, Pablo Márquez Neila
However, for any new domain application looking to use weak supervision, the dataset builder still needs to define a strategy to distribute full segmentation and other weak annotations.
1 code implementation • CVPR 2023 • Sergio Tascon-Morales, Pablo Márquez-Neila, Raphael Sznitman
Despite considerable recent progress in Visual Question Answering (VQA) models, inconsistent or contradictory answers continue to cast doubt on their true reasoning capabilities.
1 code implementation • ICCV 2023 • Lukas Zbinden, Lars Doorenbos, Theodoros Pissas, Adrian Thomas Huber, Raphael Sznitman, Pablo Márquez-Neila
Semantic segmentation has made significant progress in recent years thanks to deep neural networks, but the common objective of generating a single segmentation output that accurately matches the image's content may not be suitable for safety-critical domains such as medical diagnostics and autonomous driving.
1 code implementation • 23 Aug 2022 • Lars Doorenbos, Olena Torbaniuk, Stefano Cavuoti, Maurizio Paolillo, Giuseppe Longo, Massimo Brescia, Raphael Sznitman, Pablo Márquez-Neila
In this work, we focus on applying our method to the detection of AGN candidates in a Sloan Digital Sky Survey galaxy sample, since the identification and classification of Active Galactic Nuclei (AGN) in the optical band still remains a challenging task in extragalactic astronomy.
1 code implementation • 4 Jul 2022 • Negin Ghamsarian, Mario Taschwer, Raphael Sznitman, Klaus Schoeffmann
Semantic segmentation in cataract surgery has a wide range of applications contributing to surgical outcome enhancement and clinical risk reduction.
1 code implementation • 27 Jun 2022 • Sergio Tascon-Morales, Pablo Márquez-Neila, Raphael Sznitman
Visual Question Answering (VQA) models take an image and a natural-language question as input and infer the answer to the question.
no code implementations • 26 Nov 2021 • Lars Doorenbos, Raphael Sznitman, Pablo Márquez-Neila
Motivated by a simple thought experiment, we propose a characterization of U-OOD based on the invariants of the training dataset.
Out-of-Distribution Detection Out of Distribution (OOD) Detection
1 code implementation • 18 Jul 2021 • Laurent Lejeune, Raphael Sznitman
While most methods of this kind assume that the proportion of positive samples in the data is known a-priori, we introduce a novel self-supervised method to estimate this prior efficiently by combining a Bayesian estimation framework and new stopping criteria.
1 code implementation • 21 Jun 2021 • Andrés Marafioti, Michel Hayoz, Mathias Gallardo, Pablo Márquez Neila, Sebastian Wolf, Martin Zinkernagel, Raphael Sznitman
Cataract surgery is a sight saving surgery that is performed over 10 million times each year around the world.
1 code implementation • Frontiers in Oncology, Cancer Imaging and Image-directed interventions 2021 • Raluca-Maria Sandu, Iwan Polucci, Simeon J. S. Ruiter, Raphael Sznitman, Koert P. de Jong, Jacob Freedman, Stefan Weber and Pascale Tinguely
For subcapsular tumors, the underestimation of tumor coverage by the ablation volume when applying an unadjusted QAM method was confirmed, supporting the benefits of using the proposed algorithm for QAM computation in these cases.
no code implementations • 4 Jan 2021 • Max Allan, Jonathan McLeod, Congcong Wang, Jean Claude Rosenthal, Zhenglei Hu, Niklas Gard, Peter Eisert, Ke Xue Fu, Trevor Zeffiro, Wenyao Xia, Zhanshi Zhu, Huoling Luo, Fucang Jia, Xiran Zhang, Xiaohong Li, Lalith Sharan, Tom Kurmann, Sebastian Schmid, Raphael Sznitman, Dimitris Psychogyios, Mahdi Azizian, Danail Stoyanov, Lena Maier-Hein, Stefanie Speidel
The stereo correspondence and reconstruction of endoscopic data sub-challenge was organized during the Endovis challenge at MICCAI 2019 in Shenzhen, China.
no code implementations • 30 Oct 2020 • Lena Maier-Hein, Matthias Eisenmann, Duygu Sarikaya, Keno März, Toby Collins, Anand Malpani, Johannes Fallert, Hubertus Feussner, Stamatia Giannarou, Pietro Mascagni, Hirenkumar Nakawala, Adrian Park, Carla Pugh, Danail Stoyanov, Swaroop S. Vedula, Kevin Cleary, Gabor Fichtinger, Germain Forestier, Bernard Gibaud, Teodor Grantcharov, Makoto Hashizume, Doreen Heckmann-Nötzel, Hannes G. Kenngott, Ron Kikinis, Lars Mündermann, Nassir Navab, Sinan Onogur, Raphael Sznitman, Russell H. Taylor, Minu D. Tizabi, Martin Wagner, Gregory D. Hager, Thomas Neumuth, Nicolas Padoy, Justin Collins, Ines Gockel, Jan Goedeke, Daniel A. Hashimoto, Luc Joyeux, Kyle Lam, Daniel R. Leff, Amin Madani, Hani J. Marcus, Ozanan Meireles, Alexander Seitel, Dogu Teber, Frank Ückert, Beat P. Müller-Stich, Pierre Jannin, Stefanie Speidel
We further complement this technical perspective with (4) a review of currently available SDS products and the translational progress from academia and (5) a roadmap for faster clinical translation and exploitation of the full potential of SDS, based on an international multi-round Delphi process.
1 code implementation • 2 Mar 2020 • Minh H. Vu, Tommy Löfstedt, Tufve Nyholm, Raphael Sznitman
Deep learning methods have proven extremely effective at performing a variety of medical image analysis tasks.
no code implementations • 16 Jul 2019 • Thomas Kurmann, Pablo Márquez-Neila, Siqing Yu, Marion Munk, Sebastian Wolf, Raphael Sznitman
In this context, we present a method that automatically predicts the presence of biomarkers in OCT cross-sections by incorporating information from the entire volume.
no code implementations • 15 Jul 2019 • Tatiana Fountoukidou, Raphael Sznitman
To do this, we make use of a Twenty Questions paradigm whereby we use a probabilistic model to characterize the method's capacity to grasp task-specific concepts, and we introduce a strategy to sequentially query the method according to its previous answers.
no code implementations • 10 Jul 2019 • Thomas Kurmann, Pablo Marquez Neila, Sebastian Wolf, Raphael Sznitman
We evaluate the method using two MLC medical imaging datasets and show a large performance increase compared to previous multi-label frameworks.
1 code implementation • ICLR 2019 • Ksenia Konyushkova, Raphael Sznitman, Pascal Fua
We propose a general-purpose approach to discovering active learning (AL) strategies from data.
no code implementations • 27 Aug 2018 • Laurent Lejeune, Jan Grossrieder, Raphael Sznitman
Our object model is then used in a graph-based optimization problem that takes into account all provided locations and the image data in order to infer the complete pixel-wise segmentation.
1 code implementation • 11 Jun 2018 • Pablo Marquez-Neila, Chloe Fisher, Raphael Sznitman, Kevin Heng
Machine learning has previously been used to determine which molecules to include in the model, but the retrieval itself was still performed using standard methods.
Earth and Planetary Astrophysics Atmospheric and Oceanic Physics Data Analysis, Statistics and Probability
no code implementations • 7 May 2018 • Sebastian Bodenstedt, Max Allan, Anthony Agustinos, Xiaofei Du, Luis Garcia-Peraza-Herrera, Hannes Kenngott, Thomas Kurmann, Beat Müller-Stich, Sebastien Ourselin, Daniil Pakhomov, Raphael Sznitman, Marvin Teichmann, Martin Thoma, Tom Vercauteren, Sandrine Voros, Martin Wagner, Pamela Wochner, Lena Maier-Hein, Danail Stoyanov, Stefanie Speidel
The paper presents a comparative validation study of different vision-based methods for instrument segmentation and tracking in the context of robotic as well as conventional laparoscopic surgery.
1 code implementation • 18 Oct 2017 • Thomas Kurmann, Pablo Marquez Neila, Xiaofei Du, Pascal Fua, Danail Stoyanov, Sebastian Wolf, Raphael Sznitman
An additional advantage of our approach is that instrument detection at test time is achieved while avoiding the need for scale-dependent sliding window evaluation.
no code implementations • 16 Jul 2017 • Laurent Lejeune, Mario Christoudias, Raphael Sznitman
Many recent machine learning approaches used in medical imaging are highly reliant on large amounts of image and ground truth data.
no code implementations • 16 Jul 2017 • Stefanos Apostolopoulos, Sandro De Zanet, Carlos Ciller, Sebastian Wolf, Raphael Sznitman
The automatic segmentation of retinal layer structures enables clinically-relevant quantification and monitoring of eye disorders over time in OCT imaging.
1 code implementation • NeurIPS 2017 • Ksenia Konyushkova, Raphael Sznitman, Pascal Fua
In this paper, we suggest a novel data-driven approach to active learning (AL).
no code implementations • 12 Oct 2016 • Stefanos Apostolopoulos, Carlos Ciller, Sandro I. De Zanet, Sebastian Wolf, Raphael Sznitman
In much the same way, acquiring ground truth information for each cross-section is expensive and time consuming.
no code implementations • 29 Jun 2016 • Ksenia Konyushkova, Raphael Sznitman, Pascal Fua
Our approach combines geometric smoothness priors in the image space with more traditional uncertainty measures to estimate which pixels or voxels are the most informative, and thus should to be annotated next.
no code implementations • CVPR 2016 • Agata Mosinska, Raphael Sznitman, Przemysław Głowacki, Pascal Fua
Many recent delineation techniques owe much of their increased effectiveness to path classification algorithms that make it possible to distinguish promising paths from others.
no code implementations • ICCV 2015 • Ksenia Konyushkova, Raphael Sznitman, Pascal Fua
We propose an Active Learning approach to training a segmentation classifier that exploits geometric priors to streamline the annotation process in 3D image volumes.
no code implementations • CVPR 2014 • Przemyslaw Glowacki, Miguel Amavel Pinheiro, Engin Turetken, Raphael Sznitman, Daniel Lebrecht, Jan Kybic, Anthony Holtmaat, Pascal Fua
We propose an approach to reconstructing tree structures that evolve over time in 2D images and 3D image stacks such as neuronal axons or plant branches.
no code implementations • CVPR 2013 • Raphael Sznitman, Carlos Becker, Francois Fleuret, Pascal Fua
Cascade-style approaches to implementing ensemble classifiers can deliver significant speed-ups at test time.
no code implementations • 27 Mar 2010 • Raphael Sznitman, Bruno Jedynak
We provide a novel search technique, which uses a hierarchical model and a mutual information gain heuristic to efficiently prune the search space when localizing faces in images.