no code implementations • 13 May 2025 • Bizhan Alipour Pijan, Serdar Bozdag
Existing methods primarily capture only local or global structures of each node within a snapshot using message-passing and random walk-based methods.
1 code implementation • 31 Jan 2025 • Mohammad Al Olaimat, Serdar Bozdag
Electronic health records (EHRs) provide a comprehensive source of longitudinal patient data, encompassing structured modalities such as laboratory results, imaging data, and vital signs, and unstructured clinical notes.
no code implementations • 8 Nov 2024 • Aviad Susman, Repack Krishnamurthy, Richard Yan Chak Li, Mohammad Olaimat, Serdar Bozdag, Bino Varghese, Nasim Sheikh-Bahei, Gaurav Pandey
In this study, we developed multiple configurations of a novel multimodal and longitudinal learning framework, Longitudinal Ensemble Integration (LEI), for sequential classification.
1 code implementation • 31 Jan 2024 • Cagri Ozdemir, Mohammad Al Olaimat, Yashu Vashishath, Serdar Bozdag, Alzheimer's Disease Neuroimaging Initiative
To shed light on personalized medicine and unravel previously unknown characteristics within integrative analysis of multi-omics data, we introduce a novel integrative neural network approach for cancer molecular subtype and biomedical classification applications, named Integrative Graph Convolutional Networks (IGCN).
no code implementations • 26 Jan 2024 • Mohammad Al Olaimat, Serdar Bozdag
For interpretability, we propose employing a dual-level attention mechanism that operates between visits and features within each visit.
no code implementations • 15 Sep 2023 • Marinka Zitnik, Michelle M. Li, Aydin Wells, Kimberly Glass, Deisy Morselli Gysi, Arjun Krishnan, T. M. Murali, Predrag Radivojac, Sushmita Roy, Anaïs Baudot, Serdar Bozdag, Danny Z. Chen, Lenore Cowen, Kapil Devkota, Anthony Gitter, Sara Gosline, Pengfei Gu, Pietro H. Guzzi, Heng Huang, Meng Jiang, Ziynet Nesibe Kesimoglu, Mehmet Koyuturk, Jian Ma, Alexander R. Pico, Nataša Pržulj, Teresa M. Przytycka, Benjamin J. Raphael, Anna Ritz, Roded Sharan, Yang shen, Mona Singh, Donna K. Slonim, Hanghang Tong, Xinan Holly Yang, Byung-Jun Yoon, Haiyuan Yu, Tijana Milenković
Network biology is an interdisciplinary field bridging computational and biological sciences that has proved pivotal in advancing the understanding of cellular functions and diseases across biological systems and scales.
1 code implementation • 29 Mar 2023 • Ziynet Nesibe Kesimoglu, Serdar Bozdag
Finally, GRAF utilizes Graph Convolutional Network (GCN) on the fused network and incorporates node features on graph-structured data for a node classification or a similar downstream task.