no code implementations • 13 May 2024 • Liangrui Pan, Yijun Peng, Yan Li, Yiyi Liang, Liwen Xu, Qingchun Liang, Shaoliang Peng
Integrating the different data modalities of cancer patients can significantly improve the predictive performance of patient survival.
no code implementations • 24 Mar 2024 • Liangrui Pan, Zhenyu Zhao, Ying Lu, Kewei Tang, Liyong Fu, Qingchun Liang, Shaoliang Peng
Influenced by ChatGPT, artificial intelligence (AI) large models have witnessed a global upsurge in large model research and development.
no code implementations • 14 Mar 2024 • Liangrui Pan, Yijun Peng, Yan Li, Xiang Wang, Wenjuan Liu, Liwen Xu, Qingchun Liang, Shaoliang Peng
To mitigate the impact of missing features within the modality on prediction accuracy, we devised a convolutional masked autoencoder (CMAE) to process the heterogeneous graph post-feature reconstruction.
2 code implementations • 1 Dec 2023 • Wenwu Zeng, Dafeng Lv, Wenjuan Liu, Shaoliang Peng
Meanwhile, the ESM-NBR obtains the MCC values for DNA-binding residues prediction of 0. 427 and 0. 391 on two independent test sets, which are 18. 61 and 10. 45% higher than those of the second-best methods, respectively.
no code implementations • 21 Aug 2023 • Liangrui Pan, Lian Wang, Zhichao Feng, Liwen Xu, Shaoliang Peng
Specifically, CVFC is a three-branch joint framework composed of two Resnet38 and one Resnet50, and the independent branch multi-scale integrated feature map to generate a class activation map (CAM); in each branch, through down-sampling and The expansion method adjusts the size of the CAM; the middle branch projects the feature matrix to the query and key feature spaces, and generates a feature space perception matrix through the connection layer and inner product to adjust and refine the CAM of each branch; finally, through the feature consistency loss and feature cross loss to optimize the parameters of CVFC in co-training mode.
no code implementations • 21 Aug 2023 • Liangrui Pan, Dazheng Liu, Zhichao Feng, Wenjuan Liu, Shaoliang Peng
Due to the high heterogeneity and clinical characteristics of cancer, there are significant differences in multi-omic data and clinical characteristics among different cancer subtypes.
no code implementations • 21 Aug 2023 • Liangrui Pan, Yutao Dou, Zhichao Feng, Liwen Xu, Shaoliang Peng
In order to be able to provide local field of view diagnostic results, we propose the LDCSF model, which consists of a Swin transformer module, a local depth convolution (LDC) module, a feature reconstruction (FR) module, and a ResNet module.
1 code implementation • 9 Jul 2023 • Liangrui Pan, Dazhen Liu, Yutao Dou, Lian Wang, Zhichao Feng, Pengfei Rong, Liwen Xu, Shaoliang Peng
In this study, we proposed a generalization framework based on attention mechanisms for unsupervised contrastive learning to analyze cancer multi-omics data for the identification and characterization of cancer subtypes.
1 code implementation • 28 Mar 2023 • Deze Wang, Boxing Chen, Shanshan Li, Wei Luo, Shaoliang Peng, Wei Dong, Xiangke Liao
To alleviate the potentially catastrophic forgetting issue in multilingual models, we fix all pre-trained model parameters, insert the parameter-efficient structure adapter, and fine-tune it.
no code implementations • 20 Oct 2022 • Liangrui Pan, Lian Wang, Zhichao Feng, Zhujun Xu, Liwen Xu, Shaoliang Peng
Cellular nuclei instance segmentation and classification, and nuclear component regression tasks can aid in the analysis of the tumor microenvironment in colon tissue.
no code implementations • 31 May 2022 • Liangrui Pan, Zhichao Feng, Shaoliang Peng
Computational pathology is part of precision oncology medicine.
no code implementations • 29 Apr 2022 • Liangrui Pan, Hetian Wang, Lian Wang, Boya Ji, Mingting Liu, Mitchai Chongcheawchamnan, Jin Yuan, Shaoliang Peng
The study proposes a typical transformer image classification framework by integrating noise reduction convolutional autoencoder and feature cross fusion learning (NRCA-FCFL) to classify osteosarcoma histological images.
2 code implementations • 12 Jan 2022 • Xiaoqi Wang, Yingjie Cheng, Yaning Yang, Yue Yu, Fei Li, Shaoliang Peng
Therefore, we conjecture that the multimodal and local-global combination strategies can be treated as the guideline of multi-task SSL for drug discovery.
no code implementations • 22 Aug 2021 • Liangrui Pan, Boya Ji, Peng Xi, Xiaoqi Wang, Mitchai Chongcheawchamnan, Shaoliang Peng
Diabetic retinopathy(DR) is the main cause of blindness in diabetic patients.
1 code implementation • 20 Jul 2021 • Shuting Jin, Xiangxiang Zeng, Wei Huang, Feng Xia, Changzhi Jiang, Xiangrong Liu, Shaoliang Peng
The Corona Virus Disease 2019 (COVID-19) belongs to human coronaviruses (HCoVs), which spreads rapidly around the world.