Search Results for author: Shaoning Li

Found 5 papers, 0 papers with code

Neural P$^3$M: A Long-Range Interaction Modeling Enhancer for Geometric GNNs

no code implementations26 Sep 2024 Yusong Wang, Chaoran Cheng, Shaoning Li, Yuxuan Ren, Bin Shao, Ge Liu, Pheng-Ann Heng, Nanning Zheng

Geometric graph neural networks (GNNs) have emerged as powerful tools for modeling molecular geometry.

Design of Ligand-Binding Proteins with Atomic Flow Matching

no code implementations18 Sep 2024 Junqi Liu, Shaoning Li, Chence Shi, Zhi Yang, Jian Tang

Designing novel proteins that bind to small molecules is a long-standing challenge in computational biology, with applications in developing catalysts, biosensors, and more.

Improving AlphaFlow for Efficient Protein Ensembles Generation

no code implementations8 Jul 2024 Shaoning Li, Mingyu Li, Yusong Wang, Xinheng He, Nanning Zheng, Jian Zhang, Pheng-Ann Heng

Investigating conformational landscapes of proteins is a crucial way to understand their biological functions and properties.

F$^3$low: Frame-to-Frame Coarse-grained Molecular Dynamics with SE(3) Guided Flow Matching

no code implementations1 May 2024 Shaoning Li, Yusong Wang, Mingyu Li, Jian Zhang, Bin Shao, Nanning Zheng, Jian Tang

Molecular dynamics (MD) is a crucial technique for simulating biological systems, enabling the exploration of their dynamic nature and fostering an understanding of their functions and properties.

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