Search Results for author:
Found 40 papers, 13 papers with code
MSRF-Net: A Multi-Scale Residual Fusion Network for Biomedical Image Segmentation
The proposed MSRF-Net allows to capture object variabilities and provides improved results on different biomedical datasets.
Ranked #3 on
Medical Image Segmentation
on 2018 Data Science Bowl
TGANet: Text-guided attention for improved polyp segmentation
Even though there are deep learning methods developed for this task, variability in polyp size can impact model training, thereby limiting it to the size attribute of the majority of samples in the training dataset that may provide sub-optimal results to differently sized polyps.
Real-Time Polyp Detection, Localization and Segmentation in Colonoscopy Using Deep Learning
Benchmarking of novel methods can provide a direction to the development of automated polyp detection and segmentation tasks.
FANet: A Feedback Attention Network for Improved Biomedical Image Segmentation
We propose a novel architecture called feedback attention network (FANet) that unifies the previous epoch mask with the feature map of the current training epoch.
Ranked #1 on
Medical Image Segmentation
on EM
A multi-centre polyp detection and segmentation dataset for generalisability assessment
To our knowledge, this is the most comprehensive detection and pixel-level segmentation dataset (referred to as \textit{PolypGen}) curated by a team of computational scientists and expert gastroenterologists.
DDANet: Dual Decoder Attention Network for Automatic Polyp Segmentation
Colonoscopy is the gold standard for examination and detection of colorectal polyps.
NanoNet: Real-Time Polyp Segmentation in Video Capsule Endoscopy and Colonoscopy
To utilize automated methods in clinical settings, it is crucial to design lightweight models with low latency such that they can be integrated with low-end endoscope hardware devices.
Ranked #1 on
Medical Image Segmentation
on KvasirCapsule-SEG
Colorectal Polyps Characterization
Instrument Recognition
+4
GMSRF-Net: An improved generalizability with global multi-scale residual fusion network for polyp segmentation
The repeated fusion operations gated by CMSA and MSFS demonstrate improved generalizability of the network.
Ranked #13 on
Medical Image Segmentation
on Kvasir-SEG
An objective validation of polyp and instrument segmentation methods in colonoscopy through Medico 2020 polyp segmentation and MedAI 2021 transparency challenges
Automatic analysis of colonoscopy images has been an active field of research motivated by the importance of early detection of precancerous polyps.
Real-Time Polyp Segmentation Using U-Net with IoU Loss
Colonoscopy is the third leading cause of cancer deaths worldwide.
Kvasir-Instrument: Diagnostic and therapeutic tool segmentation dataset in gastrointestinal endoscopy
Additionally, we provide a baseline for the segmentation of the GI tools to promote research and algorithm development.
Ranked #2 on
Medical Image Segmentation
on Kvasir-Instrument
Ink removal from histopathology whole slide images by combining classification, detection and image generation models
Removal of marker ink from these high-resolution whole slide images is non-trivial and complex problem as they contaminate different regions and in an inconsistent manner.
A semi-supervised Teacher-Student framework for surgical tool detection and localization
Therefore, in this paper we introduce a semi-supervised learning (SSL) framework in surgical tool detection paradigm which aims to mitigate the scarcity of training data and the data imbalance through a knowledge distillation approach.
Towards ultra-high resolution 3D reconstruction of a whole rat brain from 3D-PLI data
We introduce a new method for registration and 3D reconstruction of high- and ultra-high resolution (64 $\mu$m and 1. 3 $\mu$m pixel size) histological images of a Wistar rat brain acquired by 3D polarized light imaging (3D-PLI).
A deep learning framework for quality assessment and restoration in video endoscopy
Given the widespread use of endoscopy in different clinical applications, we contend that the robust and reliable identification of such artifacts and the automated restoration of corrupted video frames is a fundamental medical imaging problem.
Endoscopy artifact detection (EAD 2019) challenge dataset
Endoscopic artifacts are a core challenge in facilitating the diagnosis and treatment of diseases in hollow organs.
Efficient video indexing for monitoring disease activity and progression in the upper gastrointestinal tract
In this study, we propose to use an autoencoder for efficient video compression and fast retrieval of video images.
Conv2Warp: An unsupervised deformable image registration with continuous convolution and warping
To address this problem, we propose a novel approach of learning a continuous warp of the source image.
Endoscopy disease detection challenge 2020
What could be more important than disease detection and localization?
Additive Angular Margin for Few Shot Learning to Classify Clinical Endoscopy Images
In this work, we propose to use a few-shot learning approach that requires less training data and can be used to predict label classes of test samples from an unseen dataset.
Deep learning for detection and segmentation of artefact and disease instances in gastrointestinal endoscopy
The Endoscopy Computer Vision Challenge (EndoCV) is a crowd-sourcing initiative to address eminent problems in developing reliable computer aided detection and diagnosis endoscopy systems and suggest a pathway for clinical translation of technologies.
Unsupervised Adversarial Domain Adaptation For Barrett's Segmentation
Our dataset consists of a total of 871 images consisting of both source and target domains.
Assessing YOLACT++ for real time and robust instance segmentation of medical instruments in endoscopic procedures
Image-based tracking of laparoscopic instruments plays a fundamental role in computer and robotic-assisted surgeries by aiding surgeons and increasing patient safety.
Multi-class motion-based semantic segmentation for ureteroscopy and laser lithotripsy
We propose an end-to-end CNN-based framework for the segmentation of stones and laser fiber.
Meta-learning with implicit gradients in a few-shot setting for medical image segmentation
To our knowledge, this is the first work that exploits iMAML for medical image segmentation and explores the strength of the model on scenarios such as meta-training on unique and mixed instances of lesion datasets.
Exploring Deep Learning Methods for Real-Time Surgical Instrument Segmentation in Laparoscopy
Minimally invasive surgery is a surgical intervention used to examine the organs inside the abdomen and has been widely used due to its effectiveness over open surgery.
Ranked #1 on
Medical Image Segmentation
on ROBUST-MIS
EndoUDA: A modality independent segmentation approach for endoscopy imaging
While, today most segmentation approaches are supervised and only concentrated on a single modality dataset, this work exploits to use a target-independent unsupervised domain adaptation (UDA) technique that is capable to generalize to an unseen target modality.
Real-time Instance Segmentation of Surgical Instruments using Attention and Multi-scale Feature Fusion
While accurate tracking of surgical instruments in real-time plays a crucial role in minimally invasive computer-assisted surgeries, it is a challenging task to achieve, mainly due to 1) complex surgical environment, and 2) model design with both optimal accuracy and speed.
Assessing generalisability of deep learning-based polyp detection and segmentation methods through a computer vision challenge
Polyps are well-known cancer precursors identified by colonoscopy.
Patch-level instance-group discrimination with pretext-invariant learning for colitis scoring
Inflammatory bowel disease (IBD), in particular ulcerative colitis (UC), is graded by endoscopists and this assessment is the basis for risk stratification and therapy monitoring.
Knowledge distillation with a class-aware loss for endoscopic disease detection
In this work, we leverage deep learning to develop a framework to improve the localization of difficult to detect lesions and minimize the missed detection rate.
A comprehensive survey on recent deep learning-based methods applied to surgical data
Minimally invasive surgery is highly operator dependant with a lengthy procedural time causing fatigue to surgeon and risks to patients such as injury to organs, infection, bleeding, and complications of anesthesia.
SUPRA: Superpixel Guided Loss for Improved Multi-modal Segmentation in Endoscopy
In this paper, we explore the domain generalisation technique to enable DL methods to be used in such scenarios.
Biomedical image analysis competitions: The state of current participation practice
Of these, 84% were based on standard architectures.
Why is the winner the best?
The "typical" lead of a winning team is a computer scientist with a doctoral degree, five years of experience in biomedical image analysis, and four years of experience in deep learning.
SSL-CPCD: Self-supervised learning with composite pretext-class discrimination for improved generalisability in endoscopic image analysis
We also demonstrate that our method generalises better than all SOTA methods to unseen datasets, reporting nearly 7% improvement in our generalisability assessment.
A Client-server Deep Federated Learning for Cross-domain Surgical Image Segmentation
This paper presents a solution to the cross-domain adaptation problem for 2D surgical image segmentation, explicitly considering the privacy protection of distributed datasets belonging to different centers.
Bayesian uncertainty-weighted loss for improved generalisability on polyp segmentation task
While several previous studies have devised methods for segmentation of polyps, most of these methods are not rigorously assessed on multi-center datasets.
Multi-task learning with cross-task consistency for improved depth estimation in colonoscopy
In this work, we propose to develop a novel multi-task learning (MTL) approach with a shared encoder and two decoders, namely a surface normal decoder and a depth estimator decoder.
An objective comparison of methods for augmented reality in laparoscopic liver resection by preoperative-to-intraoperative image fusion
A total of 6 teams from 4 countries participated, whose proposed methods were evaluated on 16 images and two preoperative 3D models from two patients.
