no code implementations • 14 Feb 2025 • Faruk Ahmed, Lin Yang, Tiam Jaroensri, Andrew Sellergren, Yossi Matias, Avinatan Hassidim, Greg S. Corrado, Dale R. Webster, Shravya Shetty, Shruthi Prabhakara, Yun Liu, Daniel Golden, Ellery Wulczyn, David F. Steiner
This limits interpretation of findings that span multiple high-magnification regions across multiple WSIs.
no code implementations • 22 Nov 2024 • Atilla P. Kiraly, Sebastien Baur, Kenneth Philbrick, Fereshteh Mahvar, Liron Yatziv, Tiffany Chen, Bram Sterling, Nick George, Fayaz Jamil, Jing Tang, Kai Bailey, Faruk Ahmed, Akshay Goel, Abbi Ward, Lin Yang, Andrew Sellergren, Yossi Matias, Avinatan Hassidim, Shravya Shetty, Daniel Golden, Shekoofeh Azizi, David F. Steiner, Yun Liu, Tim Thelin, Rory Pilgrim, Can Kirmizibayrak
Finally, while HAI-DEF and specifically the foundation models lower the barrier to entry for ML in healthcare, we emphasize the importance of validation with problem- and population-specific data for each desired usage setting.
1 code implementation • 11 Nov 2024 • Mohit Agarwal, Mimi Sun, Chaitanya Kamath, Arbaaz Muslim, Prithul Sarker, Joydeep Paul, Hector Yee, Marcin Sieniek, Kim Jablonski, Yael Mayer, David Fork, Sheila de Guia, Jamie McPike, Adam Boulanger, Tomer Shekel, David Schottlander, Yao Xiao, Manjit Chakravarthy Manukonda, Yun Liu, Neslihan Bulut, Sami Abu-El-Haija, Bryan Perozzi, Monica Bharel, Von Nguyen, Luke Barrington, Niv Efron, Yossi Matias, Greg Corrado, Krish Eswaran, Shruthi Prabhakara, Shravya Shetty, Gautam Prasad
To address this, we introduce a Population Dynamics Foundation Model (PDFM) that aims to capture the relationships between diverse data modalities and is applicable to a broad range of geospatial tasks.
no code implementations • 30 Oct 2024 • Mimi Sun, Chaitanya Kamath, Mohit Agarwal, Arbaaz Muslim, Hector Yee, David Schottlander, Shailesh Bavadekar, Niv Efron, Shravya Shetty, Gautam Prasad
Aggregated relative search frequencies offer a unique composite signal reflecting people's habits, concerns, interests, intents, and general information needs, which are not found in other readily available datasets.
no code implementations • 3 Oct 2024 • Mayank Daswani, Mathias M. J. Bellaiche, Marc Wilson, Desislav Ivanov, Mikhail Papkov, Eva Schnider, Jing Tang, Kay Lamerigts, Gabriela Botea, Michael A. Sanchez, Yojan Patel, Shruthi Prabhakara, Shravya Shetty, Umesh Telang
While multimodal foundation models can now natively work with data beyond text, they remain underutilized in analyzing the considerable amounts of multi-dimensional time-series data in fields like healthcare, finance, and social sciences, representing a missed opportunity for richer, data-driven insights.
no code implementations • 27 Jun 2024 • Faruk Ahmed, Andrew Sellergren, Lin Yang, Shawn Xu, Boris Babenko, Abbi Ward, Niels Olson, Arash Mohtashamian, Yossi Matias, Greg S. Corrado, Quang Duong, Dale R. Webster, Shravya Shetty, Daniel Golden, Yun Liu, David F. Steiner, Ellery Wulczyn
This enables applications utilizing a shared image-text embedding space, such as text or image retrieval for finding cases of interest, as well as integration of the WSI encoder with a frozen large language model (LLM) for WSI-based generative text capabilities such as report generation or AI-in-the-loop interactions.
no code implementations • 10 Jun 2024 • Justin Cosentino, Anastasiya Belyaeva, Xin Liu, Nicholas A. Furlotte, Zhun Yang, Chace Lee, Erik Schenck, Yojan Patel, Jian Cui, Logan Douglas Schneider, Robby Bryant, Ryan G. Gomes, Allen Jiang, Roy Lee, Yun Liu, Javier Perez, Jameson K. Rogers, Cathy Speed, Shyam Tailor, Megan Walker, Jeffrey Yu, Tim Althoff, Conor Heneghan, John Hernandez, Mark Malhotra, Leor Stern, Yossi Matias, Greg S. Corrado, Shwetak Patel, Shravya Shetty, Jiening Zhan, Shruthi Prabhakara, Daniel McDuff, Cory Y. McLean
Here we present Personal Health Large Language Model (PH-LLM), fine-tuned from Gemini for understanding and reasoning over numerical time-series personal health data.
no code implementations • 6 May 2024 • Lin Yang, Shawn Xu, Andrew Sellergren, Timo Kohlberger, Yuchen Zhou, Ira Ktena, Atilla Kiraly, Faruk Ahmed, Farhad Hormozdiari, Tiam Jaroensri, Eric Wang, Ellery Wulczyn, Fayaz Jamil, Theo Guidroz, Chuck Lau, Siyuan Qiao, Yun Liu, Akshay Goel, Kendall Park, Arnav Agharwal, Nick George, Yang Wang, Ryutaro Tanno, David G. T. Barrett, Wei-Hung Weng, S. Sara Mahdavi, Khaled Saab, Tao Tu, Sreenivasa Raju Kalidindi, Mozziyar Etemadi, Jorge Cuadros, Gregory Sorensen, Yossi Matias, Katherine Chou, Greg Corrado, Joelle Barral, Shravya Shetty, David Fleet, S. M. Ali Eslami, Daniel Tse, Shruthi Prabhakara, Cory McLean, Dave Steiner, Rory Pilgrim, Christopher Kelly, Shekoofeh Azizi, Daniel Golden
Building upon Gemini's multimodal models, we develop several models within the new Med-Gemini family that inherit core capabilities of Gemini and are optimized for medical use via fine-tuning with 2D and 3D radiology, histopathology, ophthalmology, dermatology and genomic data.
no code implementations • 4 Mar 2024 • Sebastien Baur, Zaid Nabulsi, Wei-Hung Weng, Jake Garrison, Louis Blankemeier, Sam Fishman, Christina Chen, Sujay Kakarmath, Minyoi Maimbolwa, Nsala Sanjase, Brian Shuma, Yossi Matias, Greg S. Corrado, Shwetak Patel, Shravya Shetty, Shruthi Prabhakara, Monde Muyoyeta, Diego Ardila
Health acoustic sounds such as coughs and breaths are known to contain useful health signals with significant potential for monitoring health and disease, yet are underexplored in the medical machine learning community.
no code implementations • 30 Nov 2023 • Ryutaro Tanno, David G. T. Barrett, Andrew Sellergren, Sumedh Ghaisas, Sumanth Dathathri, Abigail See, Johannes Welbl, Karan Singhal, Shekoofeh Azizi, Tao Tu, Mike Schaekermann, Rhys May, Roy Lee, SiWai Man, Zahra Ahmed, Sara Mahdavi, Yossi Matias, Joelle Barral, Ali Eslami, Danielle Belgrave, Vivek Natarajan, Shravya Shetty, Pushmeet Kohli, Po-Sen Huang, Alan Karthikesalingam, Ira Ktena
Radiology reports are an instrumental part of modern medicine, informing key clinical decisions such as diagnosis and treatment.
no code implementations • 2 Aug 2023 • Shawn Xu, Lin Yang, Christopher Kelly, Marcin Sieniek, Timo Kohlberger, Martin Ma, Wei-Hung Weng, Atilla Kiraly, Sahar Kazemzadeh, Zakkai Melamed, Jungyeon Park, Patricia Strachan, Yun Liu, Chuck Lau, Preeti Singh, Christina Chen, Mozziyar Etemadi, Sreenivasa Raju Kalidindi, Yossi Matias, Katherine Chou, Greg S. Corrado, Shravya Shetty, Daniel Tse, Shruthi Prabhakara, Daniel Golden, Rory Pilgrim, Krish Eswaran, Andrew Sellergren
In this work, we present an approach, which we call Embeddings for Language/Image-aligned X-Rays, or ELIXR, that leverages a language-aligned image encoder combined or grafted onto a fixed LLM, PaLM 2, to perform a broad range of chest X-ray tasks.
no code implementations • 18 Jul 2023 • Anastasiya Belyaeva, Justin Cosentino, Farhad Hormozdiari, Krish Eswaran, Shravya Shetty, Greg Corrado, Andrew Carroll, Cory Y. McLean, Nicholas A. Furlotte
To effectively solve personalized health tasks, LLMs need the ability to ingest a diversity of data modalities that are relevant to an individual's health status.
no code implementations • 9 May 2023 • Wei-Hung Weng, Sebastien Baur, Mayank Daswani, Christina Chen, Lauren Harrell, Sujay Kakarmath, Mariam Jabara, Babak Behsaz, Cory Y. McLean, Yossi Matias, Greg S. Corrado, Shravya Shetty, Shruthi Prabhakara, Yun Liu, Goodarz Danaei, Diego Ardila
We compared the DLS with the office-based refit-WHO score, which adopts the shared predictors from WHO and Globorisk scores (age, sex, smoking status, height, weight and systolic blood pressure) but refitted on the UK Biobank (UKB) cohort.
no code implementations • 3 Feb 2023 • Annika Reinke, Minu D. Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Carole H. Sudre, Laura Acion, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Matthew Blaschko, Florian Buettner, M. Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Robert Haase, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Jens Kleesiek, Florian Kofler, Thijs Kooi, Annette Kopp-Schneider, Michal Kozubek, Anna Kreshuk, Tahsin Kurc, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern Menze, Karel G. M. Moons, Henning Müller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M. Rafelski, Nasir Rajpoot, Mauricio Reyes, Michael A. Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I. Sánchez, Shravya Shetty, Maarten van Smeden, Ronald M. Summers, Abdel A. Taha, Aleksei Tiulpin, Sotirios A. Tsaftaris, Ben van Calster, Gaël Varoquaux, Manuel Wiesenfarth, Ziv R. Yaniv, Paul F. Jäger, Lena Maier-Hein
Validation metrics are key for the reliable tracking of scientific progress and for bridging the current chasm between artificial intelligence (AI) research and its translation into practice.
1 code implementation • Radiology 2022 • Andrew B. Sellergren, Christina Chen, Zaid Nabulsi, Yuanzhen Li, Aaron Maschinot, Aaron Sarna, Jenny Huang, Charles Lau, Sreenivasa Raju Kalidindi, Mozziyar Etemadi, Florencia Garcia-Vicente, David Melnick, Yun Liu, Krish Eswaran, Daniel Tse, Neeral Beladia, Dilip Krishnan, Shravya Shetty
Supervised contrastive learning enabled performance comparable to state-of-the-art deep learning models in multiple clinical tasks by using as few as 45 images and is a promising method for predictive modeling with use of small data sets and for predicting outcomes in shifting patient populations.
1 code implementation • 3 Jun 2022 • Lena Maier-Hein, Annika Reinke, Patrick Godau, Minu D. Tizabi, Florian Buettner, Evangelia Christodoulou, Ben Glocker, Fabian Isensee, Jens Kleesiek, Michal Kozubek, Mauricio Reyes, Michael A. Riegler, Manuel Wiesenfarth, A. Emre Kavur, Carole H. Sudre, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, Tim Rädsch, Laura Acion, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Matthew Blaschko, M. Jorge Cardoso, Veronika Cheplygina, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Robert Haase, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Pierre Jannin, Charles E. Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Florian Kofler, Annette Kopp-Schneider, Anna Kreshuk, Tahsin Kurc, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern Menze, Karel G. M. Moons, Henning Müller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Nasir Rajpoot, Nicola Rieke, Julio Saez-Rodriguez, Clara I. Sánchez, Shravya Shetty, Maarten van Smeden, Ronald M. Summers, Abdel A. Taha, Aleksei Tiulpin, Sotirios A. Tsaftaris, Ben van Calster, Gaël Varoquaux, Paul F. Jäger
The framework was developed in a multi-stage Delphi process and is based on the novel concept of a problem fingerprint - a structured representation of the given problem that captures all aspects that are relevant for metric selection, from the domain interest to the properties of the target structure(s), data set and algorithm output.
no code implementations • 22 Mar 2022 • Chace Lee, Angelica Willis, Christina Chen, Marcin Sieniek, Akib Uddin, Jonny Wong, Rory Pilgrim, Katherine Chou, Daniel Tse, Shravya Shetty, Ryan G. Gomes
Fetal ultrasounds are an essential part of prenatal care and can be used to estimate gestational age (GA).
no code implementations • 18 Mar 2022 • Ryan G. Gomes, Bellington Vwalika, Chace Lee, Angelica Willis, Marcin Sieniek, Joan T. Price, Christina Chen, Margaret P. Kasaro, James A. Taylor, Elizabeth M. Stringer, Scott Mayer McKinney, Ntazana Sindano, George E. Dahl, William Goodnight III, Justin Gilmer, Benjamin H. Chi, Charles Lau, Terry Spitz, T Saensuksopa, Kris Liu, Jonny Wong, Rory Pilgrim, Akib Uddin, Greg Corrado, Lily Peng, Katherine Chou, Daniel Tse, Jeffrey S. A. Stringer, Shravya Shetty
Using a simplified sweep protocol with real-time AI feedback on sweep quality, we have demonstrated the generalization of model performance to minimally trained novice ultrasound operators using low cost ultrasound devices with on-device AI integration.
no code implementations • 16 May 2021 • Sahar Kazemzadeh, Jin Yu, Shahar Jamshy, Rory Pilgrim, Zaid Nabulsi, Christina Chen, Neeral Beladia, Charles Lau, Scott Mayer McKinney, Thad Hughes, Atilla Kiraly, Sreenivasa Raju Kalidindi, Monde Muyoyeta, Jameson Malemela, Ting Shih, Greg S. Corrado, Lily Peng, Katherine Chou, Po-Hsuan Cameron Chen, Yun Liu, Krish Eswaran, Daniel Tse, Shravya Shetty, Shruthi Prabhakara
Tuberculosis (TB) is a top-10 cause of death worldwide.
1 code implementation • 12 Apr 2021 • Annika Reinke, Minu D. Tizabi, Carole H. Sudre, Matthias Eisenmann, Tim Rädsch, Michael Baumgartner, Laura Acion, Michela Antonelli, Tal Arbel, Spyridon Bakas, Peter Bankhead, Arriel Benis, Matthew Blaschko, Florian Buettner, M. Jorge Cardoso, Jianxu Chen, Veronika Cheplygina, Evangelia Christodoulou, Beth Cimini, Gary S. Collins, Sandy Engelhardt, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Robert Haase, Fred Hamprecht, Daniel A. Hashimoto, Doreen Heckmann-Nötzel, Peter Hirsch, Michael M. Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Alan Karthikesalingam, A. Emre Kavur, Hannes Kenngott, Jens Kleesiek, Andreas Kleppe, Sven Kohler, Florian Kofler, Annette Kopp-Schneider, Thijs Kooi, Michal Kozubek, Anna Kreshuk, Tahsin Kurc, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern Menze, David Moher, Karel G. M. Moons, Henning Müller, Brennan Nichyporuk, Felix Nickel, M. Alican Noyan, Jens Petersen, Gorkem Polat, Susanne M. Rafelski, Nasir Rajpoot, Mauricio Reyes, Nicola Rieke, Michael Riegler, Hassan Rivaz, Julio Saez-Rodriguez, Clara I. Sánchez, Julien Schroeter, Anindo Saha, M. Alper Selver, Lalith Sharan, Shravya Shetty, Maarten van Smeden, Bram Stieltjes, Ronald M. Summers, Abdel A. Taha, Aleksei Tiulpin, Sotirios A. Tsaftaris, Ben van Calster, Gaël Varoquaux, Manuel Wiesenfarth, Ziv R. Yaniv, Paul Jäger, Lena Maier-Hein
While the importance of automatic image analysis is continuously increasing, recent meta-research revealed major flaws with respect to algorithm validation.
no code implementations • 22 Oct 2020 • Zaid Nabulsi, Andrew Sellergren, Shahar Jamshy, Charles Lau, Edward Santos, Atilla P. Kiraly, Wenxing Ye, Jie Yang, Rory Pilgrim, Sahar Kazemzadeh, Jin Yu, Sreenivasa Raju Kalidindi, Mozziyar Etemadi, Florencia Garcia-Vicente, David Melnick, Greg S. Corrado, Lily Peng, Krish Eswaran, Daniel Tse, Neeral Beladia, Yun Liu, Po-Hsuan Cameron Chen, Shravya Shetty
To assess generalizability, we evaluated our system using 6 international datasets from India, China, and the United States.