no code implementations • 24 Nov 2024 • Sizhe Liu, Yizhou Lu, Siyu Chen, Xiyang Hu, Jieyu Zhao, Tianfan Fu, Yue Zhao
Recent advancements in Large Language Models (LLMs) have opened new avenues for accelerating drug discovery processes.
1 code implementation • 19 Oct 2024 • Sizhe Liu, Jun Xia, Lecheng Zhang, Yuchen Liu, Yue Liu, Wenjie Du, Zhangyang Gao, Bozhen Hu, Cheng Tan, Hongxin Xiang, Stan Z. Li
Molecular relational learning (MRL) is crucial for understanding the interaction behaviors between molecular pairs, a critical aspect of drug discovery and development.
1 code implementation • 15 Jul 2024 • Wenhao Zhu, Sizhe Liu, ShuJian Huang, Shuaijie She, Chris Wendler, Jiajun Chen
Decoding by contrasting layers (DoLa), is designed to improve the generation quality of large language models (LLMs) by contrasting the prediction probabilities between an early exit output (amateur logits) and the final output (expert logits).
1 code implementation • 24 Jun 2024 • Peng Hu, Sizhe Liu, Changjiang Gao, Xin Huang, Xue Han, Junlan Feng, Chao Deng, ShuJian Huang
However, the relationship between capabilities in different languages is less explored.
no code implementations • 16 Jun 2024 • Jingbo Zhou, Shaorong Chen, Jun Xia, Sizhe Liu, Tianze Ling, Wenjie Du, Yue Liu, Jianwei Yin, Stan Z. Li
In this work, we present the first unified benchmark NovoBench for \emph{de novo} peptide sequencing, which comprises diverse mass spectrum data, integrated models, and comprehensive evaluation metrics.
no code implementations • 9 Mar 2024 • Jun Xia, Shaorong Chen, Jingbo Zhou, Tianze Ling, Wenjie Du, Sizhe Liu, Stan Z. Li
Moreover, AdaNovo excels in identifying amino acids with PTMs and exhibits robustness against data noise.
1 code implementation • 27 Feb 2023 • Wenhao Zhu, Qianfeng Zhao, Yunzhe Lv, ShuJian Huang, Siheng Zhao, Sizhe Liu, Jiajun Chen
Augmenting the base neural model with a token-level symbolic datastore is a novel generation paradigm and has achieved promising results in machine translation (MT).