Search Results for author: Steve Pieper

Found 15 papers, 8 papers with code

SlicerTMS: Real-Time Visualization of Transcranial Magnetic Stimulation for Mental Health Treatment

1 code implementation10 May 2023 Loraine Franke, Tae Young Park, Jie Luo, Yogesh Rathi, Steve Pieper, Lipeng Ning, Daniel Haehn

We present a real-time visualization system for Transcranial Magnetic Stimulation (TMS), a non-invasive neuromodulation technique for treating various brain disorders and mental health diseases.

Computational Efficiency

The NCI Imaging Data Commons as a platform for reproducible research in computational pathology

1 code implementation16 Mar 2023 Daniela P. Schacherer, Markus D. Herrmann, David A. Clunie, Henning Höfener, William Clifford, William J. R. Longabaugh, Steve Pieper, Ron Kikinis, Andrey Fedorov, André Homeyer

Conclusions: We conclude that the IDC facilitates approaching the reproducibility limit of CompPath research (i) by enabling researchers to reuse exactly the same datasets and (ii) by integrating with cloud ML services so that experiments can be run in identically configured computing environments.

whole slide images

Slim: interoperable slide microscopy viewer and annotation tool for imaging data science and computational pathology

2 code implementations18 May 2022 Chris Gorman, Davide Punzo, Igor Octaviano, Steve Pieper, William J. R. Longabaugh, David A. Clunie, Ron Kikinis, Andrey Y. Fedorov, Markus D. Herrmann

The exchange of large and complex slide microscopy imaging data in biomedical research and pathology practice is impeded by a lack of data standardization and interoperability, which is detrimental to the reproducibility of scientific findings and clinical integration of technological innovations.

TRAKO: Efficient Transmission of Tractography Data for Visualization

1 code implementation26 Apr 2020 Daniel Haehn, Loraine Franke, Fan Zhang, Suheyla Cetin Karayumak, Steve Pieper, Lauren O'Donnell, Yogesh Rathi

Fiber tracking produces large tractography datasets that are tens of gigabytes in size consisting of millions of streamlines.

Deep Information Theoretic Registration

no code implementations31 Dec 2018 Alireza Sedghi, Jie Luo, Alireza Mehrtash, Steve Pieper, Clare M. Tempany, Tina Kapur, Parvin Mousavi, William M. Wells III

This paper establishes an information theoretic framework for deep metric based image registration techniques.

Image Registration

Repeatability of Multiparametric Prostate MRI Radiomics Features

2 code implementations16 Jul 2018 Michael Schwier, Joost van Griethuysen, Mark G Vangel, Steve Pieper, Sharon Peled, Clare M. Tempany, Hugo JWL Aerts, Ron Kikinis, Fiona M Fennessy, Andrey Fedorov

In this study we assessed the repeatability of the values of radiomics features for small prostate tumors using test-retest Multiparametric Magnetic Resonance Imaging (mpMRI) images.

Image Registration

Model-based Catheter Segmentation in MRI-images

no code implementations18 May 2017 Andre Mastmeyer, Guillaume Pernelle, Lauren Barber, Steve Pieper, Dirk Fortmeier, Sandy Wells, Heinz Handels, Tina Kapur

Accurate and reliable segmentation of catheters in MR-guided interventions remains a challenge, and a step of critical importance in clinical workflows.


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