no code implementations • 14 Aug 2024 • Omar Abdelghani Attafi, Damiano Clementel, Konstantinos Kyritsis, Emidio Capriotti, Gavin Farrell, Styliani-Christina Fragkouli, Leyla Jael Castro, András Hatos, Tom Lenaerts, Stanislav Mazurenko, Soroush Mozaffari, Franco Pradelli, Patrick Ruch, Castrense Savojardo, Paola Turina, Federico Zambelli, Damiano Piovesan, Alexander Miguel Monzon, Fotis Psomopoulos, Silvio C. E. Tosatto
Supervised machine learning (ML) is used extensively in biology and deserves closer scrutiny.
no code implementations • 3 Jul 2024 • Styliani-Christina Fragkouli, Dhwani Solanki, Leyla J Castro, Fotis E Psomopoulos, Núria Queralt-Rosinach, Davide Cirillo, Lisa C Crossman
In this commentary we aim to create an overview of the current and future position of synthetic data in infectious disease research.
1 code implementation • bioRxiv 2024 • Styliani-Christina Fragkouli, Nikos Pechlivanis, Anastasia Anastasiadou, Georgios Karakatsoulis, Aspasia Orfanou, Panagoula Kollia, Andreas Agathangelidis, Fotis Psomopoulos
Results Using synthetic dataset as ground truth provides an excellent approach for evaluating the performance of tumor-only somatic variant calling algorithms.
1 code implementation • 16 Mar 2022 • Styliani-Christina Fragkouli, Paraskevi Nousi, Nikolaos Passalis, Panagiotis Iosif, Nikolaos Stergioulas, Anastasios Tefas
In several cases, small improvements can be observed, but the most significant improvement still comes from the addition of a second network that models the residual error.
no code implementations • 9 Jul 2021 • Paraskevi Nousi, Styliani-Christina Fragkouli, Nikolaos Passalis, Panagiotis Iosif, Theocharis Apostolatos, George Pappas, Nikolaos Stergioulas, Anastasios Tefas
Based on this finding, we design a spiral module with learnable parameters, that is used as the first layer in a neural network, which learns to map the input space to the coefficients.