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Found 17 papers, 0 papers with code
Virtual histological staining of unlabeled autopsy tissue
Histological examination is a crucial step in an autopsy; however, the traditional histochemical staining of post-mortem samples faces multiple challenges, including the inferior staining quality due to autolysis caused by delayed fixation of cadaver tissue, as well as the resource-intensive nature of chemical staining procedures covering large tissue areas, which demand substantial labor, cost, and time.
eFIN: Enhanced Fourier Imager Network for generalizable autofocusing and pixel super-resolution in holographic imaging
The application of deep learning techniques has greatly enhanced holographic imaging capabilities, leading to improved phase recovery and image reconstruction.
Self-supervised learning of hologram reconstruction using physics consistency
Here, we report a self-supervised learning model, termed GedankenNet, that eliminates the need for labeled or experimental training data, and demonstrate its effectiveness and superior generalization on hologram reconstruction tasks.
Virtual impactor-based label-free bio-aerosol detection using holography and deep learning
To address this need, we present a mobile and cost-effective label-free bio-aerosol sensor that takes holographic images of flowing particulate matter concentrated by a virtual impactor, which selectively slows down and guides particles larger than ~6 microns to fly through an imaging window.
Virtual stain transfer in histology via cascaded deep neural networks
Unlike a single neural network structure which only takes one stain type as input to digitally output images of another stain type, C-DNN first uses virtual staining to transform autofluorescence microscopy images into H&E and then performs stain transfer from H&E to the domain of the other stain in a cascaded manner.
Virtual staining of defocused autofluorescence images of unlabeled tissue using deep neural networks
Here, we introduce a fast virtual staining framework that can stain defocused autofluorescence images of unlabeled tissue, achieving equivalent performance to virtual staining of in-focus label-free images, also saving significant imaging time by lowering the microscope's autofocusing precision.
Rapid and stain-free quantification of viral plaque via lens-free holography and deep learning
We also demonstrated that this data-driven plaque assay offers the capability of quantifying the infected area of the cell monolayer, performing automated counting and quantification of PFUs and virus-infected areas over a 10-fold larger dynamic range of virus concentration than standard viral plaque assays.
Deep Learning-enabled Detection and Classification of Bacterial Colonies using a Thin Film Transistor (TFT) Image Sensor
Due to the large scalability, ultra-large field-of-view, and low cost of the TFT-based image sensors, this platform can be integrated with each agar plate to be tested and disposed of after the automated CFU count.
Fourier Imager Network (FIN): A deep neural network for hologram reconstruction with superior external generalization
Deep learning-based image reconstruction methods have achieved remarkable success in phase recovery and holographic imaging.
Few-shot Transfer Learning for Holographic Image Reconstruction using a Recurrent Neural Network
Here, we demonstrate a few-shot transfer learning method that helps a holographic image reconstruction deep neural network rapidly generalize to new types of samples using small datasets.
Neural network-based image reconstruction in swept-source optical coherence tomography using undersampled spectral data
Using 2-fold undersampled spectral data (i. e., 640 spectral points per A-line), the trained neural network can blindly reconstruct 512 A-lines in ~6. 73 ms using a desktop computer, removing spatial aliasing artifacts due to spectral undersampling, also presenting a very good match to the images of the same samples, reconstructed using the full spectral OCT data (i. e., 1280 spectral points per A-line).
Holographic image reconstruction with phase recovery and autofocusing using recurrent neural networks
Digital holography is one of the most widely used label-free microscopy techniques in biomedical imaging.
Deep learning-based transformation of the H&E stain into special stains
Based on evaluation by three renal pathologists, followed by adjudication by a fourth renal pathologist, we show that the generation of virtual special stains from existing H&E images improves the diagnosis in several non-neoplastic kidney diseases sampled from 58 unique subjects.
Deep learning-based holographic polarization microscopy
Our analysis shows that a trained deep neural network can extract the birefringence information using both the sample specific morphological features as well as the holographic amplitude and phase distribution.
Deep learning-based color holographic microscopy
We report a framework based on a generative adversarial network (GAN) that performs high-fidelity color image reconstruction using a single hologram of a sample that is illuminated simultaneously by light at three different wavelengths.
Deep learning-based super-resolution in coherent imaging systems
We present a deep learning framework based on a generative adversarial network (GAN) to perform super-resolution in coherent imaging systems.
PhaseStain: Digital staining of label-free quantitative phase microscopy images using deep learning
Using a deep neural network, we demonstrate a digital staining technique, which we term PhaseStain, to transform quantitative phase images (QPI) of labelfree tissue sections into images that are equivalent to brightfield microscopy images of the same samples that are histochemically stained.
